Skip to content
Snippets Groups Projects
Commit 09a3123f authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

If ends force then override fastq read error

parent f453d711
Branches
Tags
2 merge requests!98Develop,!97If ends force then override fastq read error
Pipeline #10627 passed with stages
in 3 minutes and 23 seconds
......@@ -149,7 +149,7 @@ process getBag {
input:
path credential, stageAs: "credential.json" from deriva_getBag
path replicateExportConfig
f
output:
path ("*.zip") into bag
......@@ -439,6 +439,11 @@ process parseMetadata {
fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files"
fi
fi
if [ "${params.endsForce}" != "" ]
then
fastqReadError=false
fastqReadError_details=""
fi
# save design file
echo "\${endsMeta},\${endsRaw},\${endsManual},\${stranded},\${spike},\${species},\${readLength},\${exp},\${study}" > design.csv
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment