Merge branch '135-fix.endforce' into 'develop'

If ends force then override fastq read error

Closes #135

See merge request !97

CHANGELOG.md

@@ -18,6 +18,7 @@
 * Replace default seqwho reference location to one provided by source lab (#127)
 * Update NF Tower access token to BICF user
 * Disable NF Tower
+* Fix endness force (#135)
 
 # v2.0.0
 **User Facing**

rna-seq.nf

@@ -439,6 +439,11 @@ process parseMetadata {
         fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files"
       fi
     fi
+    if [ "${params.endsForce}" != "" ]
+    then
+      fastqReadError=false
+      fastqReadError_details=""
+    fi
 
     # save design file
     echo "\${endsMeta},\${endsRaw},\${endsManual},\${stranded},\${spike},\${species},\${readLength},\${exp},\${study}" > design.csv