diff --git a/CHANGELOG.md b/CHANGELOG.md index 00288176fc192088a07bdd0caa0e17ecee92af6b..ff95df7e0d68a67c20255a73b72f2057db5515cb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,6 +18,7 @@ * Replace default seqwho reference location to one provided by source lab (#127) * Update NF Tower access token to BICF user * Disable NF Tower +* Fix endness force (#135) # v2.0.0 **User Facing** diff --git a/rna-seq.nf b/rna-seq.nf index 3094d2865cf38a41b30476d66593b8bea015593d..e3244cc44f74279f81ce0ad73c470f7e38369520 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -439,6 +439,11 @@ process parseMetadata { fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files" fi fi + if [ "${params.endsForce}" != "" ] + then + fastqReadError=false + fastqReadError_details="" + fi # save design file echo "\${endsMeta},\${endsRaw},\${endsManual},\${stranded},\${spike},\${species},\${readLength},\${exp},\${study}" > design.csv