Commits · 7ec6bd656f1eb91df53c5c068e5436caaaca86e7 · GUDMAP_RBK / RNA-seq

Apr 07, 2020
- Merge develop into branch · 7ec6bd65
  Gervaise Henry authored 4 years ago
  
  7ec6bd65
- Add align sampled data · 2b89cc74
  Gervaise Henry authored 4 years ago
  
  2b89cc74
- Merge branch '45-parallelizeTin' into 'develop' · 469c576a
  Gervaise Henry authored 4 years ago
```
Resolve "Chunk bam for parallel tin calculation"

Closes #45

See merge request !26
```
  469c576a
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 4 years ago
  
  c0adecfd
Apr 03, 2020
- Update docs/dag.png · ab85953a
  Gervaise Henry authored 4 years ago
  
  ab85953a
Apr 02, 2020
- Fix infer.csv output · cc6ffe96
  Gervaise Henry authored 4 years ago
  
  cc6ffe96
- Deleted dag.png · a08a23e8
  Gervaise Henry authored 4 years ago
  
  a08a23e8
- Merge branch 'develop' into '45-parallelizeTin' · ca9e0973
  Gervaise Henry authored 4 years ago
```
# Conflicts:
#   workflow/rna-seq.nf
```
  ca9e0973
- Update pipeline status · 563eabd7
  Gervaise Henry authored 4 years ago
  
  563eabd7
- Update rna-seq.nf · b292ccee
  Gervaise Henry authored 4 years ago
  
  b292ccee
- Update rna-seq.nf · 862e319e
  Gervaise Henry authored 4 years ago
  
  862e319e
Apr 01, 2020
- Changed infer.tsv back to infer.csv with appropriate formatting changes. · 4346896f
  Jonathan Gesell authored 4 years ago
  
  4346896f
- Added new dag.png · e430479f
  Jonathan Gesell authored 4 years ago
  
  e430479f
Mar 30, 2020
- Corrected typo in dedup step. · 98bed3b8
  Jonathan Gesell authored 4 years ago
  
  98bed3b8
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 4 years ago
  
  622ebfca
Mar 27, 2020
- Fixed typo · 4ba43359
  Jonathan Gesell authored 4 years ago
  
  4ba43359
- Updated inferMetadata testing script · ad41969d
  Jonathan Gesell authored 4 years ago
  
  ad41969d
- Updated inferMetadata testing script · 45e96a6b
  Jonathan Gesell authored 4 years ago
  
  45e96a6b
- Updated inferMetadata testing script · 8ce8b56e
  Jonathan Gesell authored 4 years ago
  
  8ce8b56e
- Update test_dedupReads.py · d0d886a4
  Jonathan Gesell authored 4 years ago
  
  d0d886a4
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 4 years ago
  
  f8ab64d0
- Update .gitlab-ci.yml · e90a7437
  Jonathan Gesell authored 4 years ago
  
  e90a7437
- Update .gitlab-ci.yml · 552c33bd
  Jonathan Gesell authored 4 years ago
  
  552c33bd
- Update .gitlab-ci.yml · cd097223
  Jonathan Gesell authored 4 years ago
  
  cd097223
- Update .gitlab-ci.yml · 0199c4c1
  Jonathan Gesell authored 4 years ago
  
  0199c4c1
- Update .gitlab-ci.yml · 7db849c4
  Jonathan Gesell authored 4 years ago
  
  7db849c4
- Update .gitlab-ci.yml · caeb8ea8
  Jonathan Gesell authored 4 years ago
  
  caeb8ea8
- Update .gitlab-ci.yml · 6f721d95
  Jonathan Gesell authored 4 years ago
  
  6f721d95
- Update .gitlab-ci.yml · 21ddb0dd
  Jonathan Gesell authored 4 years ago
  
  21ddb0dd
- Update test_dedupReads.py · 2321e6cc
  Jonathan Gesell authored 4 years ago
  
  2321e6cc
- Update test_dedupReads.py · 12b9d87f
  Jonathan Gesell authored 4 years ago
  
  12b9d87f
- Correction to .gitlab-ci.yml · 2e7299e2
  Jonathan Gesell authored 4 years ago
  
  2e7299e2
- Update test_dedupReads.py to include split, testing chr1, chr2, chr8 · a06578ad
  Jonathan Gesell authored 4 years ago
  
  a06578ad
- Update .gitlab-ci.yml to include splitting the BAM and BAI files. · 2ee9ebdc
  Jonathan Gesell authored 4 years ago
  
  2ee9ebdc
Mar 26, 2020
- Parallelized inferMetaData's TIN calculation. · 82bac4e7
  Jonathan Gesell authored 4 years ago
  
  82bac4e7
Mar 24, 2020
- Add unlimit -a to ci integration tests · 0f30eb62
  Gervaise Henry authored 4 years ago
  
  0f30eb62
- Add getRefInfer · 5ee1ac2c
  Gervaise Henry authored 4 years ago
  
  5ee1ac2c
- Change unit test for downsampleData singularity to exec · 48c69997
  Gervaise Henry authored 4 years ago
  
  48c69997
- Add unit test for downsampleData · 8e3cf6c4
  Gervaise Henry authored 4 years ago
  
  8e3cf6c4
- Add dowsampling trimmed fastqs · 3b4d0255
  Gervaise Henry authored 4 years ago
  
  3b4d0255