Skip to content
Snippets Groups Projects
Commit 48c69997 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Change unit test for downsampleData singularity to exec

parent 8e3cf6c4
2 merge requests!37v0.0.1,!28Resolve "Move inference to start of pipeline"
Pipeline #6345 canceled with stages
in 38 minutes and 54 seconds
Hide whitespace changes
Inline Side-by-side
Showing
with 1 addition and 1 deletion
.gitlab-ci.yml
+ 1
− 1
View file @ 48c69997
......@@ -53,7 +53,7 @@ trimData:
downsampleData:
stage: unit
script:
- singularity run 'docker://bicf/seqtk:2.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5JA_1M_trimmed.fq.gz 1000 1> sampled.1.fq
- singularity exec 'docker://bicf/seqtk:2.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5JA_1M_trimmed.fq.gz 1000 1> sampled.1.fq
- pytest -m downsampleData
alignData:
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment