From 48c6999778577d14b4f6148a41922d7981286697 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 24 Mar 2020 16:02:33 -0500
Subject: [PATCH] Change unit test for downsampleData singularity to exec

---
 .gitlab-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f92dcb4..e947a25 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -53,7 +53,7 @@ trimData:
 downsampleData:
   stage: unit
   script:
-  - singularity run 'docker://bicf/seqtk:2.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5JA_1M_trimmed.fq.gz 1000 1> sampled.1.fq
+  - singularity exec 'docker://bicf/seqtk:2.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5JA_1M_trimmed.fq.gz 1000 1> sampled.1.fq
   - pytest -m downsampleData
 
 alignData:
-- 
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