Commits · 3f0ee60d08ae37b2841f78fd52a031d4d0184ccf · GUDMAP_RBK / RNA-seq

Jul 25, 2021
- Update workspace id · 3f0ee60d
  Gervaise Henry authored 3 years ago
  
  3f0ee60d
- Fix new access token · a092eb55
  Gervaise Henry authored 3 years ago
  
  a092eb55
- Add NF Tower BICF workspace ID · fe1d95b4
  Gervaise Henry authored 3 years ago
  
  fe1d95b4
- Update NF Tower access token to BICF user · 4a243d22
  Gervaise Henry authored 3 years ago
  
  4a243d22
Jul 05, 2021
- Reverted version in nextflow.config to '2.0.0' · 64fa9678
  Jon Gesell authored 3 years ago
  
  64fa9678
- Updated CHANGELOG.md and nexflot.config version numbers to 2.x.x_indev · 303f7ade
  Jon Gesell authored 3 years ago
  
  303f7ade
May 06, 2021
- Add container for new process · 9690aab3
  Gervaise Henry authored 3 years ago
  
  9690aab3
Apr 12, 2021
- Shorten aws status check · ff3c5146
  Gervaise Henry authored 3 years ago
  
  ff3c5146
Mar 21, 2021
- Update minimum nextflow version · 023e4484
  Gervaise Henry authored 4 years ago
  
  023e4484
- Finalize v2.0.0 version in manifest · 5ac7bb64
  Gervaise Henry authored 4 years ago
  
  5ac7bb64
Mar 19, 2021
- Finalize aws env ci + docs · 09bd8e2b
  Gervaise Henry authored 4 years ago
  
  09bd8e2b
Mar 18, 2021
- Add aws profile · 6da7a31c
  Gervaise Henry authored 4 years ago
  
  6da7a31c
Mar 12, 2021
- Version to v2.0.0rc02 in manifest · b7fe3901
  Gervaise Henry authored 4 years ago
  
  b7fe3901
Mar 11, 2021
- Update seqwho version to 1.0.0 · 2f95eb9a
  Gervaise Henry authored 4 years ago
  
  2f95eb9a
Mar 08, 2021
- Update images · e3330ad0
  Gervaise Henry authored 4 years ago
  
  e3330ad0
Mar 02, 2021
- Put trackStart container in nextflow.config · c6a559e6
  Gervaise Henry authored 4 years ago
  
  c6a559e6
Feb 24, 2021
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Move non nextflow configs back to workflow and symlink files · 4bd19e37
  Gervaise Henry authored 4 years ago
  
  4bd19e37
Feb 11, 2021
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 09, 2021
- Add dnanexus configs · ec4e0c7e
  Gervaise Henry authored 4 years ago
  
  ec4e0c7e
- Start implementing seqwho · 34803354
  Gervaise Henry authored 4 years ago
  
  34803354
Jan 28, 2021
- Update version to 2.0.0rc01 · 6961db25
  Gervaise Henry authored 4 years ago
  
  6961db25
Jan 25, 2021
- Merge data error pre-Execution run · 77410b76
  Gervaise Henry authored 4 years ago
  
  77410b76
- Add blank mRNA_QC on data fail · f4e88555
  Gervaise Henry authored 4 years ago
  
  f4e88555
Jan 20, 2021
- Add premature fail execution run upload with fastq file error · 94dac4ed
  Gervaise Henry authored 4 years ago
  
  94dac4ed
- Upgrade version to v1.0.3 · 6cdde011
  Gervaise Henry authored 4 years ago
  
  6cdde011
Jan 15, 2021
- Add in missinng process config. · fa009e23
  Venkat Malladi authored 4 years ago
  
  fa009e23
- Fix process name in config file · a36cfc7b
  Venkat Malladi authored 4 years ago
  
  a36cfc7b
Jan 14, 2021
- Update manifest version · 165fc906
  Gervaise Henry authored 4 years ago
  
  165fc906
Jan 09, 2021
- Update deriva container to 1.4:1.0.0 · 64fc509b
  Gervaise Henry authored 4 years ago
  
  64fc509b
Jan 08, 2021
- Get ready for 1.0.0 version. · 41565810
  Venkat Malladi authored 4 years ago
  
  41565810
Jan 07, 2021
- Remove reports from config and add to split study · 884ffb3f
  Gervaise Henry authored 4 years ago
  
  884ffb3f
- Fix config · 988b3b11
  Gervaise Henry authored 4 years ago
  
  988b3b11
- Add report, trace, timeline · efac9095
  Gervaise Henry authored 4 years ago
  
  efac9095
Jan 05, 2021
- Fix fail pre execution run · 52b950a6
  Gervaise Henry authored 4 years ago
  
  52b950a6
Jan 04, 2021
- Add fail process to configs · 68acfa31
  Gervaise Henry authored 4 years ago
  
  68acfa31
Jan 03, 2021
- Add finalize execution run and add new references using bag · 57834f48
  Gervaise Henry authored 4 years ago
  
  57834f48
Dec 28, 2020
- Fix docker image name in pipeline · 523f3b56
  Gervaise Henry authored 4 years ago
  
  523f3b56
- Update docker images in pipeline to production · 2d61ade1
  Gervaise Henry authored 4 years ago
  
  2d61ade1