Put trackStart container in nextflow.config

c6a559e6 · Gervaise Henry · 024e7e2c · c6a559e6 · c6a559e6
Commit c6a559e6 authored 4 years ago by Gervaise Henry
--- a/nextflow.config
+++ b/nextflow.config
@@ -22,6 +22,9 @@ profiles {
 }

 process {
+  withName:trackStart {
+    container = 'gudmaprbk/gudmap-rbk_base:1.0.0'
+  }
  withName:getBag {
    container = 'gudmaprbk/deriva1.4:1.0.0'
  }

--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -117,7 +117,6 @@ script_deleteEntry_uploadProcessedFile = Channel.fromPath("${baseDir}/workflow/s
 * trackStart: track start of pipeline
 */
 process trackStart {
-  container 'gudmaprbk/gudmap-rbk_base:1.0.0'
  script:
    """
    hostname