diff --git a/nextflow.config b/nextflow.config index 834e77707775e124b75b136a7869d6ae435c0fc8..7e046c710b26b487578556e4f77bba3708d48258 100644 --- a/nextflow.config +++ b/nextflow.config @@ -22,6 +22,9 @@ profiles { } process { + withName:trackStart { + container = 'gudmaprbk/gudmap-rbk_base:1.0.0' + } withName:getBag { container = 'gudmaprbk/deriva1.4:1.0.0' } diff --git a/rna-seq.nf b/rna-seq.nf index 932302f1b97adf827f72366729464c91e23709ea..fe3707128ab5ab090bade5506e88d438dd294bf6 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -117,7 +117,6 @@ script_deleteEntry_uploadProcessedFile = Channel.fromPath("${baseDir}/workflow/s * trackStart: track start of pipeline */ process trackStart { - container 'gudmaprbk/gudmap-rbk_base:1.0.0' script: """ hostname