From c6a559e6b8129329e559d333145cd255f07ee385 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 22:04:51 -0600
Subject: [PATCH] Put trackStart container in nextflow.config
---
nextflow.config | 3 +++
rna-seq.nf | 1 -
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/nextflow.config b/nextflow.config
index 834e777..7e046c7 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -22,6 +22,9 @@ profiles {
}
process {
+ withName:trackStart {
+ container = 'gudmaprbk/gudmap-rbk_base:1.0.0'
+ }
withName:getBag {
container = 'gudmaprbk/deriva1.4:1.0.0'
}
diff --git a/rna-seq.nf b/rna-seq.nf
index 932302f..fe37071 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -117,7 +117,6 @@ script_deleteEntry_uploadProcessedFile = Channel.fromPath("${baseDir}/workflow/s
* trackStart: track start of pipeline
*/
process trackStart {
- container 'gudmaprbk/gudmap-rbk_base:1.0.0'
script:
"""
hostname
--
GitLab