Add report, trace, timeline

workflow/nextflow.config

@@ -97,19 +97,19 @@ process {
 }
 
 trace {
-  enabled = false
-  file = 'pipeline_trace.txt'
+  enabled = true
+  file = '${params.outDir}/${params.repRID}_trace.txt'
   fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
 }
 
 timeline {
-  enabled = false
-  file = 'timeline.html'
+  enabled = true
+  file = '${params.outDir}/${param.repRID}_timeline.html'
 }
 
 report {
-  enabled = false
-  file = 'report.html'
+  enabled = true
+  file = '${params.outDir}/${param.repRID}_report.html'
 }
 
 tower {