diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index a62f9f584907cd170d9c2bea73864ba02a66f28e..e28fe79b56e6cb41ce8402ef024cac7f2ebfeb42 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -97,19 +97,19 @@ process {
 }
 
 trace {
-  enabled = false
-  file = 'pipeline_trace.txt'
+  enabled = true
+  file = '${params.outDir}/${params.repRID}_trace.txt'
   fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
 }
 
 timeline {
-  enabled = false
-  file = 'timeline.html'
+  enabled = true
+  file = '${params.outDir}/${param.repRID}_timeline.html'
 }
 
 report {
-  enabled = false
-  file = 'report.html'
+  enabled = true
+  file = '${params.outDir}/${param.repRID}_report.html'
 }
 
 tower {