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Commit fa009e23 authored by Venkat Malladi's avatar Venkat Malladi
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Add in missinng process config.

parent 041cfa5c
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2 merge requests!63Develop,!62REsolve Misspelled process name in config
......@@ -6,7 +6,7 @@
description: 'are collected for pipeline version.'
data: |
<dl class="dl-horizontal">
<dt>Python</dt><dd>v3.8.3</dd>
<dt>DERIVA</dt><dd>v1.4.3</dd>
<dt>BDBag</dt><dd>v1.5.6</dd>
......@@ -20,5 +20,5 @@
<dt>deepTools</dt><dd>v3.5.0</dd>
<dt>FastQC</dt><dd>v0.11.9</dd>
<dt>MultiQC</dt><dd>v1.9</dd>
<dt>Pipeline Version</dt><dd>v1.0.1</dd>
<dt>Pipeline Version</dt><dd>v1.0.2</dd>
</dl>
......@@ -116,6 +116,11 @@ process {
cpus = 1
memory = '1 GB'
}
withName:failPreExecutionRun_species {
{
cpus = 1
memory = '1 GB'
}
withName:failExecutionRun {
cpus = 1
memory = '1 GB'
......
......@@ -85,7 +85,7 @@ process {
withName:failPreExecutionRun_fastq {
executor = 'local'
}
withName:failPreExecutionRun {
withName:failPreExecutionRun_species {
executor = 'local'
}
withName:failExecutionRun {
......
......@@ -91,6 +91,9 @@ process {
withName:failPreExecutionRun_fastq {
container = 'gudmaprbk/deriva1.4:1.0.0'
}
withName:failPreExecutionRun_species {
container = 'gudmaprbk/deriva1.4:1.0.0'
}
withName:failExecutionRun {
container = 'gudmaprbk/deriva1.4:1.0.0'
}
......@@ -122,6 +125,6 @@ manifest {
homePage = 'https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq'
description = 'This pipeline was created to be a standard mRNA-sequencing analysis pipeline which integrates with the GUDMAP and RBK consortium data-hub.'
mainScript = 'rna-seq.nf'
version = 'v1.0.1'
version = 'v1.0.2'
nextflowVersion = '>=19.09.0'
}
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