diff --git a/docs/software_versions_mqc.yaml b/docs/software_versions_mqc.yaml index b1982d393f7f24cf549a830d48be20afc749533b..c860074b61116d46f549934bb126943dd008e0f1 100755 --- a/docs/software_versions_mqc.yaml +++ b/docs/software_versions_mqc.yaml @@ -6,7 +6,7 @@ description: 'are collected for pipeline version.' data: | <dl class="dl-horizontal"> - + <dt>Python</dt><dd>v3.8.3</dd> <dt>DERIVA</dt><dd>v1.4.3</dd> <dt>BDBag</dt><dd>v1.5.6</dd> @@ -20,5 +20,5 @@ <dt>deepTools</dt><dd>v3.5.0</dd> <dt>FastQC</dt><dd>v0.11.9</dd> <dt>MultiQC</dt><dd>v1.9</dd> - <dt>Pipeline Version</dt><dd>v1.0.1</dd> + <dt>Pipeline Version</dt><dd>v1.0.2</dd> </dl> diff --git a/workflow/conf/aws.config b/workflow/conf/aws.config index 9a0d374fe3edbf493b168e0763ab8064f4cc0b49..eec8a7a829280d29006d9f0dc9f9b9932d9a9867 100644 --- a/workflow/conf/aws.config +++ b/workflow/conf/aws.config @@ -116,6 +116,11 @@ process { cpus = 1 memory = '1 GB' } + withName:failPreExecutionRun_species { + { + cpus = 1 + memory = '1 GB' + } withName:failExecutionRun { cpus = 1 memory = '1 GB' diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index a3b163288bfbe5e8f528d3ed53d8ab931d13b022..33917dbe810969bc6de2482dba00df16b06547ce 100755 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -85,7 +85,7 @@ process { withName:failPreExecutionRun_fastq { executor = 'local' } - withName:failPreExecutionRun { + withName:failPreExecutionRun_species { executor = 'local' } withName:failExecutionRun { diff --git a/workflow/nextflow.config b/workflow/nextflow.config index b7a36ff2c2fd0eea2663953b12a93545bca2b72d..66b847beffb6499b9ba16678887ed0488c2d12cb 100644 --- a/workflow/nextflow.config +++ b/workflow/nextflow.config @@ -91,6 +91,9 @@ process { withName:failPreExecutionRun_fastq { container = 'gudmaprbk/deriva1.4:1.0.0' } + withName:failPreExecutionRun_species { + container = 'gudmaprbk/deriva1.4:1.0.0' + } withName:failExecutionRun { container = 'gudmaprbk/deriva1.4:1.0.0' } @@ -122,6 +125,6 @@ manifest { homePage = 'https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq' description = 'This pipeline was created to be a standard mRNA-sequencing analysis pipeline which integrates with the GUDMAP and RBK consortium data-hub.' mainScript = 'rna-seq.nf' - version = 'v1.0.1' + version = 'v1.0.2' nextflowVersion = '>=19.09.0' }