Shorten aws status check

.gitlab-ci.yml

@@ -1102,10 +1102,12 @@ aws:
       id=$(echo ${id}| grep -oP "jobId\K.*" | tr -d '"' | tr -d ":" | tr -d " " | tr -d "}")
     - >
       status=$(aws batch describe-jobs --jobs ${id} | grep -oP "status\": \K.*" | tr -d '"' | tr -d ',' | tr -d " " ) &&
-      until [[ "${status}" == "SUCCEEDED" || "${status}" == "FAILED" ]]; do
+      until [[ "${status}" == "SUCCEEDED" ] || [ "${status}" == "FAILED" ]]; do
         status=$(aws batch describe-jobs --jobs ${id} | grep -oP "status\": \K.*" | tr -d '"' | tr -d ',' | tr -d " " ) &&
         echo ${status} &&
-        sleep 5m
+        if [[ "${status}" != "SUCCEEDED" && "${status}" != "FAILED" ]]; then
+          sleep 1m
+        fi
       done
     - >
       if [ "${status}" == "SUCCEEDED" ]; then

nextflow.config

@@ -106,22 +106,6 @@ process {
   }
 }
 
-trace {
-  enabled = false
-  file = 'trace.txt'
-  fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
-}
-
-timeline {
-  enabled = false
-  file = 'timeline.html'
-}
-
-report {
-  enabled = false
-  file = 'report.html'
-}
-
 tower {
   accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f'
   enabled = true