Update docker images in pipeline to production

workflow/nextflow.config

@@ -20,52 +20,52 @@ profiles {
 
 process {
   withName:getBag {
-    container = 'bicf/gudmaprbkfilexfer:2.0.1_indev'
+    container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName:getData {
-    container = 'bicf/gudmaprbkfilexfer:2.0.1_indev'
+    container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName: parseMetadata {
     container = 'gudmaprbk/python3:1.0.0'
   }
   withName: trimData {
-    container = 'bicf/trimgalore:1.1'
+    container = 'gudmaprbk/trimgalore0.6.5::1.0.0'
   }
   withName: getRefInfer {
     container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName: downsampleData {
-    container = 'bicf/seqtk:2.0.1_indev'
+    container = 'gudmaprbk/seqtk1.3:1.0.0'
   }
   withName: alignSampleData {
-    container = 'bicf/gudmaprbkaligner:2.0.1_indev'
+    container = 'gudmaprbk/hisat2.2.1:1.0.0'
   }
   withName: inferMetadata {
-    container = 'bicf/rseqc3.0:2.0.1_indev'
+    container = 'gudmaprbk/rseqc4.0.0:1.0.0'
   }
   withName: getRef {
     container = 'gudmaprbk/deriva1.3:1.0.0'
   }
   withName: alignData {
-    container = 'bicf/gudmaprbkaligner:2.0.1_indev'
+    container = 'gudmaprbk/hisat2.2.1:1.0.0'
   }
   withName: dedupData {
-    container = 'bicf/gudmaprbkdedup:2.0.0'
+    container = 'gudmaprbk/picard2.23.9:1.0.0'
   }
   withName: countData {
-    container = 'bicf/subread2:2.0.0'
+    container = 'gudmaprbk/subread2.0.1:1.0.0'
   }
   withName: makeBigWig {
-    container = 'bicf/deeptools3.3:2.0.1_indev'
+    container = 'gudmaprbk/deeptools3.5.0:1.0.0'
   }
   withName: fastqc {
-    container = 'bicf/fastqc:2.0.1_indev'
+    container = 'gudmaprbk/fastqc0.11.9:1.0.0'
   }
   withName: dataQC {
-    container = 'bicf/rseqc3.0:2.0.1_indev'
+    container = 'gudmaprbk/rseqc4.0.0:1.0.0'
   }
   withName: aggrQC {
-    container = 'bicf/multiqc1.8:2.0.1_indev'
+    container = 'gudmaprbk/multiqc1.9:1.0.0'
   }
   withName:uploadInputBag {
     container = 'gudmaprbk/deriva1.3:1.0.0'