Commits · 363b1b1762ac76466e34b89b5e8e092a9c97b83c · GUDMAP_RBK / RNA-seq

Feb 24, 2021
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Move non nextflow configs back to workflow and symlink files · 4bd19e37
  Gervaise Henry authored 4 years ago
  
  4bd19e37
Feb 11, 2021
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 09, 2021
- Add dnanexus configs · ec4e0c7e
  Gervaise Henry authored 4 years ago
  
  ec4e0c7e
- Start implementing seqwho · 34803354
  Gervaise Henry authored 4 years ago
  
  34803354
Jan 28, 2021
- Update version to 2.0.0rc01 · 6961db25
  Gervaise Henry authored 4 years ago
  
  6961db25
Jan 25, 2021
- Merge data error pre-Execution run · 77410b76
  Gervaise Henry authored 4 years ago
  
  77410b76
- Add blank mRNA_QC on data fail · f4e88555
  Gervaise Henry authored 4 years ago
  
  f4e88555
Jan 20, 2021
- Add premature fail execution run upload with fastq file error · 94dac4ed
  Gervaise Henry authored 4 years ago
  
  94dac4ed
- Upgrade version to v1.0.3 · 6cdde011
  Gervaise Henry authored 4 years ago
  
  6cdde011
Jan 15, 2021
- Add in missinng process config. · fa009e23
  Venkat Malladi authored 4 years ago
  
  fa009e23
- Fix process name in config file · a36cfc7b
  Venkat Malladi authored 4 years ago
  
  a36cfc7b
Jan 14, 2021
- Update manifest version · 165fc906
  Gervaise Henry authored 4 years ago
  
  165fc906
Jan 09, 2021
- Update deriva container to 1.4:1.0.0 · 64fc509b
  Gervaise Henry authored 4 years ago
  
  64fc509b
Jan 08, 2021
- Get ready for 1.0.0 version. · 41565810
  Venkat Malladi authored 4 years ago
  
  41565810
Jan 07, 2021
- Remove reports from config and add to split study · 884ffb3f
  Gervaise Henry authored 4 years ago
  
  884ffb3f
- Fix config · 988b3b11
  Gervaise Henry authored 4 years ago
  
  988b3b11
- Add report, trace, timeline · efac9095
  Gervaise Henry authored 4 years ago
  
  efac9095
Jan 05, 2021
- Fix fail pre execution run · 52b950a6
  Gervaise Henry authored 4 years ago
  
  52b950a6
Jan 04, 2021
- Add fail process to configs · 68acfa31
  Gervaise Henry authored 4 years ago
  
  68acfa31
Jan 03, 2021
- Add finalize execution run and add new references using bag · 57834f48
  Gervaise Henry authored 4 years ago
  
  57834f48
Dec 28, 2020
- Fix docker image name in pipeline · 523f3b56
  Gervaise Henry authored 4 years ago
  
  523f3b56
- Update docker images in pipeline to production · 2d61ade1
  Gervaise Henry authored 4 years ago
  
  2d61ade1
Dec 17, 2020
- Change process output bag name to uploadProcessedFiles · b08a7fc5
  Gervaise Henry authored 4 years ago
  
  b08a7fc5
- Change Workflow name · 1e6c14ae
  Gervaise Henry authored 4 years ago
  
  1e6c14ae
- Prep for version 0.1.0_indev · e8d478de
  Gervaise Henry authored 4 years ago
  
  e8d478de
Dec 14, 2020
- Add Output Bag · bdfd5567
  Gervaise Henry authored 4 years ago
  
  bdfd5567
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Oct 31, 2020
- Update config for email. · 7cf8c4d2
  Venkat Malladi authored 4 years ago
  
  7cf8c4d2
Sep 13, 2020
- Update deriva and python containers in config · accde9b7
  Gervaise Henry authored 4 years ago
  
  accde9b7
Aug 27, 2020
- Update CHANGELOG.md, workflow/nextflow.config files · 698ec0c7
  Gervaise Henry authored 4 years ago
  
  698ec0c7
Aug 24, 2020
- Add new custom tables to multiqc #72 · 79f7c244
  Gervaise Henry authored 4 years ago
  
  79f7c244
Aug 13, 2020
- Turn off run logs · cc3de641
  Gervaise Henry authored 4 years ago
  
  cc3de641
Aug 12, 2020
- Add inital output bag creation · 49e3be49
  Gervaise Henry authored 4 years ago
  
  49e3be49
Aug 11, 2020
- Version to 0.0.1 · 8a8ce097
  Gervaise Henry authored 4 years ago
  
  8a8ce097
Jul 23, 2020
- AWS Batch works · 9fe16dfb
  Gervaise Henry authored 4 years ago
  
  9fe16dfb