Commits · 867b9ec1ab7976cad5e019cea5009d6d63d61f2e · BICF / Astrocyte / chipseq_analysis

Mar 15, 2019
- Fix path. · 867b9ec1
  Venkat Malladi authored 6 years ago
  
  867b9ec1
Mar 14, 2019
- Fix yml. · 34a5183e
  Venkat Malladi authored 6 years ago
  
  34a5183e
- Fix tests. · 2f1c6283
  Venkat Malladi authored 6 years ago
  
  2f1c6283
Mar 13, 2019
- Update file paths. · 51489c2c
  Venkat Malladi authored 6 years ago
  
  51489c2c
Mar 12, 2019
- Merge branch '31-skip_steps' into 'master' · 0817965e
  Venkat Malladi authored 6 years ago
```
Resolve "skip motif search and diff bind"

Closes #31

See merge request !21
```
  0817965e
- Fix tests. · 82a4e5a5
  Venkat Malladi authored 6 years ago
  
  82a4e5a5
- Move skip to first. · ec22feba
  Venkat Malladi authored 6 years ago
  
  ec22feba
- Change overlap peaks back to original. · 8b35fcee
  Venkat Malladi authored 6 years ago
  
  8b35fcee
Mar 11, 2019
- Fix test output. · 65749462
  Venkat Malladi authored 6 years ago
  
  65749462
- Merge branch 'master' into 31-skip_steps · 5c720694
  Venkat Malladi authored 6 years ago
  
  5c720694
Mar 10, 2019

Merge branch '23-rename_output' into 'master' · 56539919

Venkat Malladi authored 6 years ago

Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"

Closes #23

See merge request !20

56539919

Mar 09, 2019
- Fix stage of test. · a8684f42
  Venkat Malladi authored 6 years ago
  
  a8684f42
- Update tests and add a skip test that only runs on branches. · ee0828f0
  Venkat Malladi authored 6 years ago
  
  ee0828f0
- Add in skipping of diffBind and motif search. · aa5566a2
  Venkat Malladi authored 6 years ago
  
  aa5566a2
- Only run certain tests on branches vs master. · d9919554
  Venkat Malladi authored 6 years ago
  
  d9919554
- Fix diff peaks output for single end. · 5f6dd111
  Venkat Malladi authored 6 years ago
  
  5f6dd111
Mar 08, 2019
- Fix test output. · 6f79eba4
  Venkat Malladi authored 6 years ago
  
  6f79eba4
Mar 07, 2019
- Remove extra bwa command. · b095c05f
  Venkat Malladi authored 6 years ago
  
  b095c05f
- Fix rename. · 276dac3b
  Venkat Malladi authored 6 years ago
  
  276dac3b
Feb 05, 2019
- Pin versions with corrected syntax. · 55a605d1
  Venkat Malladi authored 6 years ago
  
  55a605d1
- Pin versions.; · e193b1a1
  Venkat Malladi authored 6 years ago
  
  e193b1a1
- Update items to install. · f3cfaa92
  Venkat Malladi authored 6 years ago
  
  f3cfaa92
- Add in correct shuffle step. · 29868d56
  Venkat Malladi authored 6 years ago
  
  29868d56
- Fix output directory. #28 . · 81054b5c
  Venkat Malladi authored 6 years ago
  
  81054b5c
- Update where test files are coming from. · 4bf3f4ac
  Venkat Malladi authored 6 years ago
  
  4bf3f4ac
- Update git ignore. · 280550d3
  Venkat Malladi authored 6 years ago
  
  280550d3
- Update tests and merge. · 8991d010
  Venkat Malladi authored 6 years ago
  
  8991d010
Jan 31, 2019
- Merge branch '27_pdfs_plots' into 'master' · 4a653c8f
  Venkat Malladi authored 6 years ago
```
27 pdfs plots

See merge request !19
```
  4a653c8f
Jan 25, 2019
- edited png to pdf · 419a82ca
  Holly Ruess authored 6 years ago
  
  419a82ca
Jan 22, 2019
- change png to pdf · 4a069abf
  Holly Ruess authored 6 years ago
  
  4a069abf
Jan 19, 2019
- Fix the missing parathesis. · e6955b5c
  Venkat Malladi authored 6 years ago
  
  e6955b5c
- Fix test output. · 511f55b0
  Venkat Malladi authored 6 years ago
  
  511f55b0
Jan 18, 2019
- add Pearson Correlation, make plots pdf · e78c5af1
  Holly Ruess authored 6 years ago
  
  e78c5af1
Jan 15, 2019
- Split tests to make more readable. · 0bd2c988
  Venkat Malladi authored 6 years ago
  
  0bd2c988
- Modify tests. · 89340f9c
  Venkat Malladi authored 6 years ago
  
  89340f9c
Jan 14, 2019
- Fix output directories and file names. · 21aac926
  Venkat Malladi authored 6 years ago
  
  21aac926
- Fix Trim reads output to match. · 483dd61f
  Venkat Malladi authored 6 years ago
  
  483dd61f
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 13, 2019
- Update file name output. · 4aa91a5c
  Venkat Malladi authored 6 years ago
  
  4aa91a5c
- Add return back to xcor. · ba769bcc
  Venkat Malladi authored 6 years ago
  
  ba769bcc