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Commit 81054b5c authored by Venkat Malladi's avatar Venkat Malladi
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Fix output directory. #28.

parent 4bf3f4ac
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1 merge request!20Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"
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workflow/main.nf
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......@@ -395,7 +395,7 @@ process consensusPeaks {
// Annotate Peaks
process peakAnnotation {
publishDir "$baseDir/output/${task.process}", mode: 'copy'
publishDir "$outDir/${task.process}", mode: 'copy'
input:
......@@ -416,7 +416,7 @@ process peakAnnotation {
// Motif Search Peaks
process motifSearch {
publishDir "$baseDir/output/${task.process}", mode: 'copy'
publishDir "$outDir/${task.process}", mode: 'copy'
input:
......@@ -441,7 +441,7 @@ uniqueExperimentsList = uniqueExperiments
// Calculate Differential Binding Activity
process diffPeaks {
publishDir "$baseDir/output/${task.process}", mode: 'copy'
publishDir "$outDir/${task.process}", mode: 'copy'
input:
......
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