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Astrocyte
chipseq_analysis
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5f6dd111
Commit
5f6dd111
authored
6 years ago
by
Venkat Malladi
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Fix diff peaks output for single end.
parent
6f79eba4
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1 merge request
!20
Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"
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workflow/tests/test_diff_peaks.py
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5f6dd111
...
...
@@ -42,7 +42,7 @@ def test_diffbind_singleend_multiple_rep():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
ENCSR238SGC_vs_ENCSR272GNQ_diffbind.bed
'
))
diffbind_file
=
test_output_path
+
'
ENCSR238SGC_vs_ENCSR272GNQ_diffbind.csv
'
assert
os
.
path
.
exists
(
diffbind_file
)
assert
utils
.
count_lines
(
diffbind_file
)
==
201039
assert
utils
.
count_lines
(
diffbind_file
)
==
197471
@pytest.mark.paireddiff
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