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Commit 867b9ec1 authored by Venkat Malladi's avatar Venkat Malladi
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Fix path.

parent 34a5183e
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1 merge request!22Resolve "New folders for all steps"
Pipeline #3258 failed with stages
in 14 hours, 28 minutes, and 25 seconds
......@@ -12,7 +12,7 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.singleend
def test_trim_reads_singleend():
raw_fastq = test_data_path + 'ENCLB144FDT/ENCFF833BLU.fastq.gz'
raw_fastq = test_data_path + 'ENCFF833BLU.fastq.gz'
trimmed_fastq = test_output_path + 'ENCLB144FDT/ENCLB144FDT_R1_trimmed.fq.gz'
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2512853101
......@@ -27,7 +27,7 @@ def test_trim_report_singleend():
@pytest.mark.pairedend
def test_trim_reads_pairedend():
raw_fastq = test_data_path + 'ENCLB637LZP/ENCFF582IOZ.fastq.gz'
raw_fastq = test_data_path + 'ENCFF582IOZ.fastq.gz'
trimmed_fastq = test_output_path + 'ENCLB637LZP/ENCLB637LZP_R2_val_2.fq.gz'
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2229312710
......
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