From 867b9ec1ab7976cad5e019cea5009d6d63d61f2e Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 15 Mar 2019 09:58:18 -0500
Subject: [PATCH] Fix path.
---
workflow/tests/test_trim_reads.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/tests/test_trim_reads.py b/workflow/tests/test_trim_reads.py
index 953f15a..e017076 100644
--- a/workflow/tests/test_trim_reads.py
+++ b/workflow/tests/test_trim_reads.py
@@ -12,7 +12,7 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.singleend
def test_trim_reads_singleend():
- raw_fastq = test_data_path + 'ENCLB144FDT/ENCFF833BLU.fastq.gz'
+ raw_fastq = test_data_path + 'ENCFF833BLU.fastq.gz'
trimmed_fastq = test_output_path + 'ENCLB144FDT/ENCLB144FDT_R1_trimmed.fq.gz'
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2512853101
@@ -27,7 +27,7 @@ def test_trim_report_singleend():
@pytest.mark.pairedend
def test_trim_reads_pairedend():
- raw_fastq = test_data_path + 'ENCLB637LZP/ENCFF582IOZ.fastq.gz'
+ raw_fastq = test_data_path + 'ENCFF582IOZ.fastq.gz'
trimmed_fastq = test_output_path + 'ENCLB637LZP/ENCLB637LZP_R2_val_2.fq.gz'
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2229312710
--
GitLab