There was a problem fetching the pipeline stages.
Merge branch '23-rename_output' into 'master'
Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline" Closes #23 See merge request !20
Showing
- .gitignore 3 additions, 0 deletions.gitignore
- .gitlab-ci.yml 18 additions, 2 deletions.gitlab-ci.yml
- workflow/.DS_Store 0 additions, 0 deletionsworkflow/.DS_Store
- workflow/main.nf 14 additions, 13 deletionsworkflow/main.nf
- workflow/scripts/annotate_peaks.R 1 addition, 1 deletionworkflow/scripts/annotate_peaks.R
- workflow/scripts/call_peaks_macs.py 14 additions, 12 deletionsworkflow/scripts/call_peaks_macs.py
- workflow/scripts/check_design.py 42 additions, 2 deletionsworkflow/scripts/check_design.py
- workflow/scripts/convert_reads.py 3 additions, 4 deletionsworkflow/scripts/convert_reads.py
- workflow/scripts/diff_peaks.R 1 addition, 1 deletionworkflow/scripts/diff_peaks.R
- workflow/scripts/experiment_qc.py 7 additions, 6 deletionsworkflow/scripts/experiment_qc.py
- workflow/scripts/map_qc.py 21 additions, 21 deletionsworkflow/scripts/map_qc.py
- workflow/scripts/map_reads.py 26 additions, 28 deletionsworkflow/scripts/map_reads.py
- workflow/scripts/motif_search.py 61 additions, 14 deletionsworkflow/scripts/motif_search.py
- workflow/scripts/overlap_peaks.py 20 additions, 20 deletionsworkflow/scripts/overlap_peaks.py
- workflow/scripts/pool_and_psuedoreplicate.py 39 additions, 25 deletionsworkflow/scripts/pool_and_psuedoreplicate.py
- workflow/scripts/runDeepTools.py 0 additions, 81 deletionsworkflow/scripts/runDeepTools.py
- workflow/scripts/trim_reads.py 36 additions, 1 deletionworkflow/scripts/trim_reads.py
- workflow/scripts/utils.py 2 additions, 3 deletionsworkflow/scripts/utils.py
- workflow/scripts/xcor.py 15 additions, 7 deletionsworkflow/scripts/xcor.py
- workflow/tests/test_annotate_peaks.py 19 additions, 4 deletionsworkflow/tests/test_annotate_peaks.py
Please register or sign in to comment