Explore BioHPC Git
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additional steps are necessary to build HON within UTSW due to proxy and firewalls
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This is a folder for my 3 months training.
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An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.
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Simple Gears to help you start your own development at UT Southwestern
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code for interchangeability by Nancy Obuchowski
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A single-cell RNA-seq analysis workflow for data stored on the BioHPC using CellRanger and Seurat.
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Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".
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Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.
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This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.
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A repository for code to replicate the analysis of single cell data from female human urethra.
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Analysis scripts for projects related to germ cell tumors.
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A host registry for various images used in Astrocyte
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Generate flow-rate gradients with Fluigent microfluidic pumps.
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A Flywheel gear to import MEG metadata from files
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