GitLab

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

additional steps are necessary to build HON within UTSW due to proxy and firewalls

A host registry for various images used in Astrocyte

3 month training notes/walkthrough of excersises

R code for subsample correlation analysis as used in Thody et al. 2022.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

Analysis scripts for projects related to germ cell tumors.

cutandrun pipeline from https://github.com/nf-core/cutandrun

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

The runner for cutandrun

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis