Commits · e066daaa51dfced6e3a523bb1827f031e4aae731 · NGS CLIA Lab / process_scripts

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Mar 05, 2018
- java compatibility problem (snpEff uses 8) others use 7 · e066daaa
  Brandi Cantarel authored 7 years ago
  
  publish_0.1.1
  
  e066daaa
Mar 02, 2018
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 47d58a2e
  Brandi Cantarel authored 7 years ago
  
  47d58a2e
- update somaticvc.pl · 2c0d9ac2
  Brandi Cantarel authored 7 years ago
  
  2c0d9ac2
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 8b7a9d27
  Brandi Cantarel authored 7 years ago
  
  8b7a9d27
- update somatic_vcf.sh · 5d1e29c6
  Brandi Cantarel authored 7 years ago
  
  5d1e29c6
Feb 28, 2018
- update cnv kit filter · f29af901
  Brandi Cantarel authored 7 years ago
  
  publish_0.1.0
  
  f29af901
Feb 24, 2018
- adding updates formatting · 4fe8bcaf
  Brandi Cantarel authored 7 years ago
  
  4fe8bcaf
Feb 21, 2018
- modify errors in somatic_vc.sh · d8c03da1
  Brandi Cantarel authored 7 years ago
  
  d8c03da1
Feb 18, 2018
- fixing platypus union format · 09e71db1
  Brandi Cantarel authored 7 years ago
  
  09e71db1
Feb 16, 2018
- updating git repo · 41a31528
  Brandi Cantarel authored 7 years ago
  
  41a31528
Feb 14, 2018
- update gatkrunner · 6dd51206
  Brandi Cantarel authored 7 years ago
  
  6dd51206
Feb 13, 2018
- adding rnaseq umi · cd2b26a8
  Brandi Cantarel authored 7 years ago
  
  cd2b26a8
Feb 11, 2018
- updating for cron and rnaseq · 4b0b4985
  Brandi Cantarel authored 7 years ago
  
  4b0b4985
Jan 26, 2018
- updating cnv and union code for umi · a911d9f5
  Brandi Cantarel authored 7 years ago
  
  a911d9f5
Jan 25, 2018
- remove parse_cnvkit_table.pl · d43a024e
  Brandi Cantarel authored 7 years ago
  
  d43a024e
- adding cnv and umicode · 2b3b3cfe
  Brandi Cantarel authored 7 years ago
  
  2b3b3cfe
Dec 15, 2017
- final bugs somatic/sv workflows · 11a5dfe5
  Brandi Cantarel authored 7 years ago
  
  11a5dfe5
Dec 08, 2017
- lancet update · 23e205b9
  Brandi Cantarel authored 7 years ago
  
  23e205b9
Dec 06, 2017
- update svcalling for somatic · 91f715b4
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.10
  
  91f715b4
Dec 05, 2017
- adding updates to sv and somatic coding · ff59f96d
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.9
  
  ff59f96d
Dec 04, 2017
- adding somatic code · b03c7f3f
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.8
  
  b03c7f3f
- somatic union updates · 06eb1972
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.7
  
  06eb1972
Nov 28, 2017
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · b9d65518
  Brandi Cantarel authored 7 years ago
  
  b9d65518
- adding space to if · 70fad152
  Brandi Cantarel authored 7 years ago
  
  70fad152
- final bams used for somatic tools · bc4836c1
  Chelsea Raulerson authored 7 years ago
  
  bc4836c1
- fix varscan option · 87e71f14
  Chelsea Raulerson authored 7 years ago
  
  87e71f14
Nov 27, 2017
- somatic caller bash script · 3f0afcc5
  Chelsea Raulerson authored 7 years ago
  
  3f0afcc5
Nov 20, 2017
- update unioncode platypus bug · 87557454
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.6
  
  87557454
Nov 17, 2017
- umi RG bug · 679cd228
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.5
  
  679cd228
Nov 15, 2017
- typo script path bamqc.sh · 2c1dee61
  Brandi Cantarel authored 7 years ago
  
  2c1dee61
Nov 13, 2017
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · fe2b5933
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.4
  
  fe2b5933
- debug variant calling · c7aa1da1
  Brandi Cantarel authored 7 years ago
  
  c7aa1da1
Nov 10, 2017
- typo markdups · 0ccf418d
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.3
  
  0ccf418d
- update for variant calling debugging · 3d9955f6
  Brandi Cantarel authored 7 years ago
  
  3d9955f6
Nov 06, 2017
- prepare_release · 1fa984ad
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.2
  
  1fa984ad
- updating union · 28fc369f
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.1
  
  28fc369f
- adding union code · d58e9577
  Brandi Cantarel authored 7 years ago
  
  d58e9577
Nov 03, 2017
- debugging germlinevc/union · fff6d8b9
  Brandi Cantarel authored 7 years ago
  
  fff6d8b9
Oct 31, 2017
- add annotvcf.sh · a17ae372
  Brandi Cantarel authored 7 years ago
  
  a17ae372
- typo germline_vc.sh · c90d2d4e
  Brandi Cantarel authored 7 years ago
  
  c90d2d4e