alignment/bamqc.sh

alignment/dnaseqalign.sh

alignment/filter_genefusions.pl

alignment/indexbams.sh

alignment/markdups.sh

alignment/rnaseqalign.sh

alignment/starfusion.sh

diff_exp/geneabundance.sh

genect_rnaseq/cBioPortal_documents.pl

preproc_fastq/trimgalore.sh

variants/annotvcf.sh

variants/cnvkit.sh

variants/filter_cnvkit.pl

variants/gatkrunner.sh

variants/germline_vc.sh

variants/somatic_vc.sh

variants/svcalling.sh

variants/union.sh

variants/unionvcf.pl