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Commit 5d1e29c6 authored by Brandi Cantarel's avatar Brandi Cantarel
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update somatic_vcf.sh

parent 4fe8bcaf
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......@@ -83,7 +83,7 @@ source /etc/profile.d/modules.sh
if [ $algo == 'strelka2' ]
then
module load strelka/2.9.0 samtools/1.6 manta/1.3.1 snpeff/4.3q vcftools/0.1.14
module load strelka/2.8.3 samtools/1.6 manta/1.2.0 snpeff/4.3q vcftools/0.1.14
mkdir manta strelka
configManta.py --normalBam ${mnormal} --tumorBam ${mtumor} --referenceFasta ${reffa} --runDir manta
manta/runWorkflow.py -m local -j 8
......
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