update for variant calling debugging (3d9955f6) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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3d9955f6

Commit 3d9955f6 authored 7 years ago by

Brandi Cantarel

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update for variant calling debugging

parent 1fa984ad

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Changes 11

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alignment/add_umi_sam.py 29 additions, 0 deletions

alignment/add_umi_sam.py
alignment/bamqc.sh 15 additions, 9 deletions

alignment/bamqc.sh
alignment/dnaseqalign.sh 21 additions, 18 deletions

alignment/dnaseqalign.sh
alignment/markdups.sh 2 additions, 0 deletions

alignment/markdups.sh
alignment/rnaseqalign.sh 10 additions, 2 deletions

alignment/rnaseqalign.sh
variants/annot_sv.pl 154 additions, 0 deletions

variants/annot_sv.pl
variants/cnvkit.sh 1 addition, 1 deletion

variants/cnvkit.sh
variants/germline_vc.sh 1 addition, 1 deletion

variants/germline_vc.sh
variants/svcalling.sh 88 additions, 0 deletions

variants/svcalling.sh
variants/union.sh 2 additions, 1 deletion

variants/union.sh
variants/vcf2bed.sv.pl 69 additions, 0 deletions

variants/vcf2bed.sv.pl

with 392 additions and 32 deletions

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