Commits · eac0a7c5ac7ccd5877691a07bdaf8a100885257e · GUDMAP_RBK / RNA-seq

Feb 03, 2020
- Fix outdir for fastqc ci and process · 4ca7cd19
  Gervaise Henry authored 5 years ago
  
  4ca7cd19
- Write fastqc output in current dir for ci · 2735b0c4
  Gervaise Henry authored 5 years ago
  
  2735b0c4
- Add CI for fastqc · 8f580cc7
  Gervaise Henry authored 5 years ago
  
  8f580cc7
Jan 30, 2020
- Fix specie/s in CI · 0bf42fdf
  Gervaise Henry authored 5 years ago
  
  0bf42fdf
- Cleanup some ci misses · 529dadea
  Gervaise Henry authored 5 years ago
  
  529dadea
- RE-specified the output directory. · 91a9ea5f
  Jonathan Gesell authored 5 years ago
  
  91a9ea5f
- Corrected file names · 30349d74
  Jonathan Gesell authored 5 years ago
  
  30349d74
- Corrected input and output BAM file paths. · f2dd8009
  Jonathan Gesell authored 5 years ago
  
  f2dd8009
- Update .gitlab-ci.yml, removed variable IDs. · 06790eb4
  Jonathan Gesell authored 5 years ago
  
  06790eb4
- Added unit testing · a28ab789
  Jonathan Gesell authored 5 years ago
  
  a28ab789
- Put change to parseMeta script to ci also · f49af45e
  Gervaise Henry authored 5 years ago
  
  f49af45e
Jan 29, 2020
- Fix ci yml formal · f03e0077
  Gervaise Henry authored 5 years ago
  
  f03e0077
- Fix mus ref loc name · a0cd39f7
  Gervaise Henry authored 5 years ago
  
  a0cd39f7
- Fetch references from s3 · 5e8def40
  Gervaise Henry authored 5 years ago
  
  5e8def40
Jan 24, 2020
- Update .gitlab-ci.yml · c1554d3c
  Jonathan Gesell authored 5 years ago
  
  c1554d3c
- Corrected CI file. · 60d6e158
  Jonathan Gesell authored 5 years ago
  
  60d6e158
- Corrected CI file. · 9afa2ee9
  Jonathan Gesell authored 5 years ago
  
  9afa2ee9
- Updated test scripts. · de4d2b8b
  Jonathan Gesell authored 5 years ago
  
  de4d2b8b
Jan 19, 2020
- Add to unit test for endManual · 0f709935
  Gervaise Henry authored 5 years ago
  
  0f709935
Jan 18, 2020
- Add unit test for parseMetadata · 8c5b5a80
  Gervaise Henry authored 5 years ago
  
  8c5b5a80
Jan 15, 2020
- Combine trimData CI se/pe into 1 unit test · 947e7543
  Gervaise Henry authored 5 years ago
  
  947e7543
- Module load nextflow · 103fb9db
  Gervaise Henry authored 5 years ago
  
  103fb9db
- Add initial integration CI test · 07605c0d
  Gervaise Henry authored 5 years ago
  
  07605c0d
Jan 14, 2020
- Add pytest for trim · c7ea5cba
  Gervaise Henry authored 5 years ago
  
  c7ea5cba
- Add pytest for getBag · 60fc625d
  Gervaise Henry authored 5 years ago
  
  60fc625d
- Update .gitlab-ci.yml · beae6362
  Gervaise Henry authored 5 years ago
  
  beae6362
- Update .gitlab-ci.yml · b4b42928
  Gervaise Henry authored 5 years ago
  
  b4b42928
- Update .gitlab-ci.yml · 2347e535
  Gervaise Henry authored 5 years ago
  
  2347e535
- Update .gitlab-ci.yml · 5771fcc1
  Gervaise Henry authored 5 years ago
  
  5771fcc1
- Update .gitlab-ci.yml · 17f187dc
  Gervaise Henry authored 5 years ago
  
  17f187dc
- Update .gitlab-ci.yml · 917a5f7f
  Gervaise Henry authored 5 years ago
  
  917a5f7f
- Fix indent · fb588535
  Gervaise Henry authored 5 years ago
  
  fb588535
- Add CI for trimData · 4882cf04
  Gervaise Henry authored 5 years ago
  
  4882cf04
- Add CI for getData · 5585f4ad
  Gervaise Henry authored 5 years ago
  
  5585f4ad
- Add CI for getBag · eb655d33
  Gervaise Henry authored 5 years ago
  
  eb655d33
Dec 09, 2019
- Upgrade docker images (gudmaprbkfilexfer and trimgalore) to 1.1 · 0147ece8
  Gervaise Henry authored 5 years ago
  
  0147ece8
Dec 03, 2019
- Fix path in validate statement · 218210f0
  Jeremy Mathews authored 5 years ago
  
  218210f0
- Strip CI to base · 23e761b2
  Jeremy Mathews authored 5 years ago
  
  23e761b2
Nov 25, 2019
- double brackets? · 0e1a3778
  Jeremy Mathews authored 5 years ago
  
  0e1a3778
- double quote? · fac6cc37
  Jeremy Mathews authored 5 years ago
  
  fac6cc37