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Commit 5585f4ad authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add CI for getData

parent eb655d33
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3 merge requests!37v0.0.1,!11Develop,!7Resolve "Add CI for Trim"
......@@ -11,4 +11,11 @@ getBag:
stage: unit
script:
- ln -sf `readlink -e ./test_data/auth/credential.json` ~/.deriva/credential.json
- singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4
\ No newline at end of file
- singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4
getData:
stage: unit
script:
- ln -sf `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- unzip ./test_data/bagit/Replicate_16-1ZX4
- singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4
\ No newline at end of file
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