From 5585f4adc73b5f76d413a326cfc095e40bbcd3d9 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Tue, 14 Jan 2020 11:36:54 -0600 Subject: [PATCH] Add CI for getData --- .gitlab-ci.yml | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index dc43b74..84af1dd 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -11,4 +11,11 @@ getBag: stage: unit script: - ln -sf `readlink -e ./test_data/auth/credential.json` ~/.deriva/credential.json - - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 \ No newline at end of file + - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 + +getData: + stage: unit + script: + - ln -sf `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt + - unzip ./test_data/bagit/Replicate_16-1ZX4 + - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4 \ No newline at end of file -- GitLab