diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index dc43b74e9b89674529ebf8c61e866b546125b3da..84af1ddcbe683d7d9b1695336517de375f41fca7 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -11,4 +11,11 @@ getBag: stage: unit script: - ln -sf `readlink -e ./test_data/auth/credential.json` ~/.deriva/credential.json - - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 \ No newline at end of file + - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 + +getData: + stage: unit + script: + - ln -sf `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt + - unzip ./test_data/bagit/Replicate_16-1ZX4 + - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4 \ No newline at end of file