Skip to content
Snippets Groups Projects
Commit 8c5b5a80 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Add unit test for parseMetadata

parent 07007f49
Branches
Tags
2 merge requests!37v0.0.1,!14Resolve "process_createManifest"
Pipeline #5729 failed with stages
in 25 minutes and 24 seconds
Hide whitespace changes
Inline Side-by-side
Showing
with 8 additions and 0 deletions
.gitlab-ci.yml
+ 8
− 0
View file @ 8c5b5a80
......@@ -26,6 +26,14 @@ getData:
- singularity run 'docker://bicf/gudmaprbkfilexfer:1.3' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4
- pytest -m getData
parseMetadata:
stage: unit
script:
- singularity run 'docker://bicf/python3:1.3' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p repRID
- singularity run 'docker://bicf/python3:1.3' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p ends
- singularity run 'docker://bicf/python3:1.3' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p stranded
- singularity run 'docker://bicf/python3:1.3' python3 ./workflow/scripts/parseMeta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p specie
trimData:
stage: unit
script:
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment