Resolve "process_createManifest" (!14) · Merge requests · GUDMAP_RBK / RNA-seq · GitLab

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Merged Resolve "process_createManifest"

2-process_createManifest into develop

Merged Gervaise Henry requested to merge 2-process_createManifest into develop 5 years ago

Parses RBK/GUDMAP metadata to be used in further process, example is trim step.

PR checklist

This comment contains a description of changes (with reason)
If you've fixed a bug or added code that should be tested, add tests!

Close issue
Closes #2 (closed)

/cc @ghenry @venkat.malladi

Edited 5 years ago by Venkat Malladi

Activity

Gervaise Henry changed milestone to %v0.0.1 5 years ago

changed milestone to %v0.0.1
Gervaise Henry added Doing label 5 years ago

added Doing label
Gervaise Henry marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed 5 years ago

marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed
Gervaise Henry added 2 commits 5 years ago
added 2 commits

fd0b7c01 - Fix script as input for parseMetadata

96626502 - Fix script as input for parseMetadata

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

c2b81c7c - Remove ends output from trimData

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

0acf38a4 - Add manual detection of endness if not stored

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

0f709935 - Add to unit test for endManual

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Gervaise Henry added 2 commits 5 years ago
added 2 commits

bce4b6ea - Keep meta endness separate

29f36785 - Fix undetected meta endness

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

fbd2da78 - Fix len fastqs

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

70ce7af1 - Fix fastq # test

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

e7eaeaa4 - Fix endsManual

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

9081851f - Ignore FutureWarnings

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

714c61bc - Ignore FutureWarnings

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

c876602e - Fix endsManual log

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

7b6f7324 - Fix replication of ends

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

b1330359 - Remove set ends in trimData

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

9d8a1032 - Add quotes around endsMeta test

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

aeaeda5a - Make quotes matching

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Gervaise Henry added 1 commit 5 years ago
added 1 commit

960e0e4f - Add ends used to log

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Venkat Malladi @venkat.malladi started a thread on an old version of the diff 5 years ago

Resolved 5 years ago by Venkat Malladi

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