Commits · c17b8a62e4275d1c5547b79468d490d6c0b2fb3a · GUDMAP_RBK / RNA-seq

Apr 22, 2020
- Add unit CI test for (new) inferMetadata · c17b8a62
  Gervaise Henry authored 4 years ago
  
  c17b8a62
- Fix align unit summary output · 488fff57
  Gervaise Henry authored 4 years ago
  
  488fff57
- Change parseMetadata CI unit test to match new mechanism · c53ffd6c
  Gervaise Henry authored 4 years ago
  
  c53ffd6c
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 4 years ago
  
  53c34278
Apr 07, 2020
- Reorder processes · 1d48e1ef
  Gervaise Henry authored 4 years ago
  
  1d48e1ef
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 4 years ago
  
  c0adecfd
Mar 30, 2020
- Corrected typo in dedup step. · 98bed3b8
  Jonathan Gesell authored 4 years ago
  
  98bed3b8
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 4 years ago
  
  622ebfca
Mar 27, 2020
- Fixed typo · 4ba43359
  Jonathan Gesell authored 4 years ago
  
  4ba43359
- Updated inferMetadata testing script · ad41969d
  Jonathan Gesell authored 4 years ago
  
  ad41969d
- Updated inferMetadata testing script · 45e96a6b
  Jonathan Gesell authored 4 years ago
  
  45e96a6b
- Updated inferMetadata testing script · 8ce8b56e
  Jonathan Gesell authored 4 years ago
  
  8ce8b56e
- Update .gitlab-ci.yml · e90a7437
  Jonathan Gesell authored 4 years ago
  
  e90a7437
- Update .gitlab-ci.yml · 552c33bd
  Jonathan Gesell authored 4 years ago
  
  552c33bd
- Update .gitlab-ci.yml · cd097223
  Jonathan Gesell authored 4 years ago
  
  cd097223
- Update .gitlab-ci.yml · 0199c4c1
  Jonathan Gesell authored 4 years ago
  
  0199c4c1
- Update .gitlab-ci.yml · 7db849c4
  Jonathan Gesell authored 4 years ago
  
  7db849c4
- Update .gitlab-ci.yml · caeb8ea8
  Jonathan Gesell authored 4 years ago
  
  caeb8ea8
- Update .gitlab-ci.yml · 6f721d95
  Jonathan Gesell authored 4 years ago
  
  6f721d95
- Update .gitlab-ci.yml · 21ddb0dd
  Jonathan Gesell authored 4 years ago
  
  21ddb0dd
- Correction to .gitlab-ci.yml · 2e7299e2
  Jonathan Gesell authored 4 years ago
  
  2e7299e2
- Update .gitlab-ci.yml to include splitting the BAM and BAI files. · 2ee9ebdc
  Jonathan Gesell authored 4 years ago
  
  2ee9ebdc
Mar 24, 2020
- Add unlimit -a to ci integration tests · 0f30eb62
  Gervaise Henry authored 5 years ago
  
  0f30eb62
- Change unit test for downsampleData singularity to exec · 48c69997
  Gervaise Henry authored 5 years ago
  
  48c69997
- Add unit test for downsampleData · 8e3cf6c4
  Gervaise Henry authored 5 years ago
  
  8e3cf6c4
Mar 20, 2020
- Corrected typo in makeFeatureCounts test. · 7d2108a5
  Jonathan Gesell authored 5 years ago
  
  7d2108a5
- Code review changes/corrections · 28f1a97f
  Jonathan Gesell authored 5 years ago
  
  28f1a97f
Mar 14, 2020
- Fix mkdir bdbag in ci · 68224f63
  Gervaise Henry authored 5 years ago
  
  68224f63
Mar 13, 2020
- Add process log files · 1f7e1dc9
  Gervaise Henry authored 5 years ago
  
  1f7e1dc9
Mar 12, 2020
- Fix bam indexing output name to .bam.bai · 70e6fa19
  Gervaise Henry authored 5 years ago
  
  70e6fa19
- Fix tin input in unit CO · 3e7d2beb
  Gervaise Henry authored 5 years ago
  
  3e7d2beb
- Add unit test for inferMetadata · a2a809c7
  Gervaise Henry authored 5 years ago
  
  a2a809c7
Mar 08, 2020
- Fix path of script for unit test · b36bb08e
  Gervaise Henry authored 5 years ago
  
  b36bb08e
- Fix docker handle in unit test · 2ab086d2
  Gervaise Henry authored 5 years ago
  
  2ab086d2
- Add unit test for makeFeatureCounts · 88c55e12
  Gervaise Henry authored 5 years ago
  
  88c55e12
Mar 06, 2020
- Add ulimit to ci integration · 899957ed
  Gervaise Henry authored 5 years ago
  
  899957ed
Feb 18, 2020
- Update unit for getRef to use local refs · 75486483
  Gervaise Henry authored 5 years ago
  
  75486483
Feb 17, 2020
- Make integration_pe create dag and make artifact · 0d895b2c
  Gervaise Henry authored 5 years ago
  
  0d895b2c
Feb 14, 2020
- Add missing gitlab-ci.yml for new getData · 841dcea3
  Gervaise Henry authored 5 years ago
  
  841dcea3
- Test bdbag fetch on text file · de33d175
  Gervaise Henry authored 5 years ago
  
  de33d175