Commits · bfe6bebc004db12ba9dfefdfc436da91312f77d7 · GUDMAP_RBK / RNA-seq

Mar 02, 2021
- Fix ends force · bfe6bebc
  Gervaise Henry authored 4 years ago
  
  bfe6bebc
- Change getData fastqForce varible to param · 3026d63e
  Gervaise Henry authored 4 years ago
  
  3026d63e
- Set fastq count temporarily to zero if overridden · d633e19c
  Gervaise Henry authored 4 years ago
  
  d633e19c
- Fix seqwho tsv output for multiqc · 8f50b748
  Gervaise Henry authored 4 years ago
  
  8f50b748
- Add ends override · d3e19ff3
  Gervaise Henry authored 4 years ago
  
  d3e19ff3
- Don't donwload fastqs if overridden · 1e8d161e
  Gervaise Henry authored 4 years ago
  
  1e8d161e
- Update changelog · 30abfb69
  Gervaise Henry authored 4 years ago
  
  30abfb69
- Fix seqwho multiqc table · a9ee163f
  Gervaise Henry authored 4 years ago
  
  a9ee163f
- Add seqwho infer QC table to multiqc · d1271604
  Gervaise Henry authored 4 years ago
  
  d1271604
Mar 01, 2021
- Add missing speciesError to when · d9be943e
  Gervaise Henry authored 4 years ago
  
  d9be943e
- Put multiple when's into a single line · 84dd8e50
  Gervaise Henry authored 4 years ago
  
  84dd8e50
- Add handeling for low confidence seq type · 7a096fd5
  Gervaise Henry authored 4 years ago
  
  7a096fd5
Feb 28, 2021
- Disconnect confidence from species and seq type inference · b858a9d7
  Gervaise Henry authored 4 years ago
  
  b858a9d7
- Add quotes to seqwho error · 43f749d8
  Gervaise Henry authored 4 years ago
  
  43f749d8
- Add quotes to seqwho error · eec5b4c5
  Gervaise Henry authored 4 years ago
  
  eec5b4c5
- Merge dnanexus changes · edd49982
  Gervaise Henry authored 4 years ago
  
  edd49982
Feb 24, 2021
- Fix nf reference in ci · 94d3aaaa
  Gervaise Henry authored 4 years ago
  
  94d3aaaa
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Add back mkdir -p in seqwho unit test · 6e2c01a8
  Gervaise Henry authored 4 years ago
  
  6e2c01a8
- Try removing ./ from seqwho -f in unit test · 91930b4a
  Gervaise Henry authored 4 years ago
  
  91930b4a
- Make dummy dir for plots · 6b2a74d6
  Gervaise Henry authored 4 years ago
  
  6b2a74d6
- Fix seqwho version collection in ci · 7b90b9dc
  Gervaise Henry authored 4 years ago
  
  7b90b9dc
- Use datahub as source for integration_se ci · 3ce1ddf7
  Gervaise Henry authored 4 years ago
  
  3ce1ddf7
- Fix ci lint · ba58c650
  Gervaise Henry authored 4 years ago
  
  ba58c650
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Merge branch 'dnanexus' into 'develop' · 4d7e5c98
  Venkat Malladi authored 4 years ago
```
Dnanexus

See merge request !70
```
  4d7e5c98
- Change nextflow run locations for CI to root · 0e05309f
  Gervaise Henry authored 4 years ago
  
  0e05309f
- Merge branch 'develop' into 'dnanexus' · 9c320c12
  Gervaise Henry authored 4 years ago
```
# Conflicts:
#   nextflow.config
#   rna-seq.nf
```
  9c320c12
- Update file refs in .nf to match new locations · 53c18086
  Gervaise Henry authored 4 years ago
  
  53c18086
- Update CHANGELOG · 4d3cbbc9
  Gervaise Henry authored 4 years ago
  
  4d3cbbc9
- Add dnanexusExample.json file · d2f9fcd5
  Gervaise Henry authored 4 years ago
  
  d2f9fcd5
- Update README.md · b82a1a63
  Gervaise Henry authored 4 years ago
  
  b82a1a63
- Add to cleanup · 192320f0
  Gervaise Henry authored 4 years ago
  
  192320f0
- Move non nextflow configs back to workflow and symlink files · 4bd19e37
  Gervaise Henry authored 4 years ago
  
  4bd19e37
- Add test for seq type failure · 50715724
  Gervaise Henry authored 4 years ago
  
  50715724
- Utilize seq type inference from seqwho · 3c5f30fb
  Gervaise Henry authored 4 years ago
  
  3c5f30fb
Feb 18, 2021
- Fix missing auth file processes · f355c461
  Gervaise Henry authored 4 years ago
  
  f355c461
- Fix align machinetype in d dnanexus config · f309fa46
  Gervaise Henry authored 4 years ago
  
  f309fa46
Feb 16, 2021
- Add cpu/mem to dnanexus config · 78fc6ecc
  Gervaise Henry authored 4 years ago
  
  78fc6ecc
Feb 15, 2021
- Fix bigwig output name pattern · ddb35f4e
  Gervaise Henry authored 4 years ago
  
  ddb35f4e