Commits · 9763c0a746a2480c31c6925fbbf7f16ad73fb3e4 · GUDMAP_RBK / RNA-seq

Nov 09, 2020
- Fix output for vrsion of nextflow pipeline. · 9763c0a7
  Venkat Malladi authored 4 years ago
  
  9763c0a7
- Fix output file for versions. · be7ae1f2
  Venkat Malladi authored 4 years ago
  
  be7ae1f2
- Move to the end. · bc30e5ce
  Venkat Malladi authored 4 years ago
  
  bc30e5ce
- remove jar version. · b724942b
  Venkat Malladi authored 4 years ago
  
  b724942b
- remove seqtk and update output for stdout. · 08c58f6f
  Venkat Malladi authored 4 years ago
  
  08c58f6f
- Fix test stage name. · 482fd80d
  Venkat Malladi authored 4 years ago
  
  482fd80d
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Sep 20, 2020
- Reduce species inference cutoffs · c114a629
  Gervaise Henry authored 4 years ago
  
  0.0.4_indev
  
  c114a629
Sep 14, 2020
- Merge branch '23-ref.to.datahub' into 'develop' · f0100c48
  Venkat Malladi authored 4 years ago
```
Resolve "Move references to GUDMAP/RBK"

Closes #23

See merge request !45
```
  f0100c48
- Update docs/dag.png · bfc0f444
  Gervaise Henry authored 4 years ago
  
  bfc0f444
- Fix elif · deabc9e6
  Gervaise Henry authored 4 years ago
  
  deabc9e6
- Fix datahub specific bed folder move · cb073c1e
  Gervaise Henry authored 4 years ago
  
  cb073c1e
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
- Update changelog · b2f6e30d
  Gervaise Henry authored 4 years ago
  
  b2f6e30d
- Fix ref move after getRef datahub pull · 296ee453
  Gervaise Henry authored 4 years ago
  
  296ee453
- Update docs · c8a7ab57
  Gervaise Henry authored 4 years ago
  
  c8a7ab57
- Add refName to getRef · 719bd9f5
  Gervaise Henry authored 4 years ago
  
  719bd9f5
Sep 13, 2020
- Fix pulled ref mv · b25ebe4e
  Gervaise Henry authored 4 years ago
  
  b25ebe4e
- Move bed only on non ERCC · af4b5d04
  Gervaise Henry authored 4 years ago
  
  af4b5d04
- Add search for ERCC ref · 778044bc
  Gervaise Henry authored 4 years ago
  
  778044bc
- Combine inputs for getRefInfer · b123b09a
  Gervaise Henry authored 4 years ago
  
  b123b09a
- Remove collect for getRefInfer · fe197fce
  Gervaise Henry authored 4 years ago
  
  fe197fce
- Use channel · 7a0560f5
  Gervaise Henry authored 4 years ago
  
  7a0560f5
- Add extractRefData.py as channel · 42048773
  Gervaise Henry authored 4 years ago
  
  42048773
- Revert each · 8795d7f5
  Gervaise Henry authored 4 years ago
  
  8795d7f5
- Try each refInfer · c8ce8d74
  Gervaise Henry authored 4 years ago
  
  c8ce8d74
- Fix curl query · 8a236b73
  Gervaise Henry authored 4 years ago
  
  8a236b73
- Add refSource to param table · f0cf62ed
  Gervaise Henry authored 4 years ago
  
  f0cf62ed
- Add deriva auth to getRef · 9de3a949
  Gervaise Henry authored 4 years ago
  
  9de3a949
- Update datahub ref download · 2f239170
  Gervaise Henry authored 4 years ago
  
  2f239170
- Update deriva and python containers in config · accde9b7
  Gervaise Henry authored 4 years ago
  
  accde9b7
- Add datahub fetch for pipeline · 6ff4315b
  Gervaise Henry authored 4 years ago
  
  6ff4315b
- Update ref unit test for datahub · 45b7f679
  Gervaise Henry authored 4 years ago
  
  45b7f679
- Split grep from pipe from python · df0f368b
  Gervaise Henry authored 4 years ago
  
  df0f368b
Sep 12, 2020
- Fix extractRefData arg · 17df0fa5
  Gervaise Henry authored 4 years ago
  
  17df0fa5
Sep 11, 2020
- Change datahub ref ci form get to ls · 0883570c
  Gervaise Henry authored 4 years ago
  
  0883570c
- Use new gudmaprbk dockerhub deriva1.3 for ref unit · 160b314c
  Gervaise Henry authored 4 years ago
  
  160b314c
Sep 10, 2020
- Update .gitlab-ci.yml · 166616ec
  Venkat Malladi authored 4 years ago
  
  166616ec
- Update .gitlab-ci.yml · 6dc46c16
  Venkat Malladi authored 4 years ago
  
  6dc46c16
- Fix version · 2d08f484
  Venkat Malladi authored 4 years ago
  
  2d08f484