Merge branch '23-ref.to.datahub' into 'develop'
Resolve "Move references to GUDMAP/RBK" Closes #23 See merge request !45
Showing
- .gitlab-ci.yml 78 additions, 15 deletions.gitlab-ci.yml
- CHANGELOG.md 5 additions, 2 deletionsCHANGELOG.md
- README.md 3 additions, 0 deletionsREADME.md
- docs/dag.png 0 additions, 0 deletionsdocs/dag.png
- workflow/conf/aws.config 4 additions, 0 deletionsworkflow/conf/aws.config
- workflow/conf/biohpc.config 4 additions, 0 deletionsworkflow/conf/biohpc.config
- workflow/nextflow.config 3 additions, 3 deletionsworkflow/nextflow.config
- workflow/rna-seq.nf 99 additions, 23 deletionsworkflow/rna-seq.nf
- workflow/scripts/extractRefData.py 33 additions, 0 deletionsworkflow/scripts/extractRefData.py
- workflow/scripts/parseMeta.py 32 additions, 19 deletionsworkflow/scripts/parseMeta.py
- workflow/scripts/splitStudy.py 9 additions, 4 deletionsworkflow/scripts/splitStudy.py
- workflow/scripts/tinHist.py 28 additions, 19 deletionsworkflow/scripts/tinHist.py
- workflow/scripts/utils.py 10 additions, 15 deletionsworkflow/scripts/utils.py
- workflow/tests/test_alignReads.py 13 additions, 7 deletionsworkflow/tests/test_alignReads.py
- workflow/tests/test_consistency.py 11 additions, 6 deletionsworkflow/tests/test_consistency.py
- workflow/tests/test_dataQC.py 7 additions, 3 deletionsworkflow/tests/test_dataQC.py
- workflow/tests/test_dedupReads.py 17 additions, 9 deletionsworkflow/tests/test_dedupReads.py
- workflow/tests/test_downsampleData.py 3 additions, 2 deletionsworkflow/tests/test_downsampleData.py
- workflow/tests/test_fastqc.py 4 additions, 2 deletionsworkflow/tests/test_fastqc.py
- workflow/tests/test_getBag.py 4 additions, 2 deletionsworkflow/tests/test_getBag.py
Please register or sign in to comment