Merge branch '23-ref.to.datahub' into 'develop'

Resolve "Move references to GUDMAP/RBK"

Closes #23

See merge request !45
17 jobs for develop in 3 minutes and 54 seconds (queued for 4 seconds)
Status Job ID Name Coverage
  Unit
passed #105361
alignData

00:02:19

passed #105363
countData

00:02:03

passed #105366
dataQC

00:01:21

passed #105362
dedupData

00:00:47

passed #105360
downsampleData

00:00:18

passed #105365
fastqc

00:01:03

passed #105355
getBag

00:00:20

passed #105356
getData

00:00:20

passed #105358
inferMetadata

00:00:20

passed #105364
makeBigWig

00:01:02

passed #105367
outputBag

00:00:55

passed #105357
parseMetadata

00:00:51

passed #105359
trimData

00:01:42

 
  Reference
passed #105368
humanBioHPC

00:01:34

passed #105370
humanDataHub

00:00:16

passed #105369
mouseBioHPC

00:01:33

failed #105371
mousenDataHub

00:00:06

 
Name Stage Failure
failed
mousenDataHub Reference
$ module load nextflow/20.01.0
$ ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
$ mkdir -p ~/.deriva
$ mkdir -p ~/.bdbag
$ ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
ln: failed to create symbolic link ‘/home2/bicf_user/.bdbag/deriva-cookies.txt’: File exists
Running after_script
Uploading artifacts for failed job
ERROR: Job failed: exit status 1