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Commit be7ae1f2 authored by Venkat Malladi's avatar Venkat Malladi
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Fix output file for versions.

parent bc30e5ce
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2 merge requests!58Develop,!48Resolve "Output tool version to report in multiqc"
Pipeline #8309 failed with stages
in 1 minute and 38 seconds
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Inline Side-by-side
workflow/scripts/generate_versions.py
+ 9
− 12
View file @ be7ae1f2
......@@ -90,23 +90,20 @@ def main():
out_filename = output + '_mqc.yaml'
results = OrderedDict()
results['Nextflow'] = '<span style="color:#999999;\">Not Run</span>'
results['Python'] = '<span style="color:#999999;\">Not Run</span>'
results['DERIVA'] = '<span style="color:#999999;\">Not Run</span>'
results['BDBag'] = '<span style="color:#999999;\">Not Run</span>'
results['RSeQC'] = '<span style="color:#999999;\">Not Run</span>'
results['Trim Galore!'] = '<span style="color:#999999;\">Not Run</span>'
results['Cutadapt'] = '<span style="color:#999999;\">Not Run</span>'
results['BWA'] = '<span style="color:#999999;\">Not Run</span>'
results['HISAT2'] = '<span style="color:#999999;\">Not Run</span>'
results['Samtools'] = '<span style="color:#999999;\">Not Run</span>'
results['Sambamba'] = '<span style="color:#999999;\">Not Run</span>'
results['BEDTools'] = '<span style="color:#999999;\">Not Run</span>'
results['picard (MarkDuplicates)'] = '<span style="color:#999999;\">Not Run</span>'
results['featureCounts'] = '<span style="color:#999999;\">Not Run</span>'
results['R'] = '<span style="color:#999999;\">Not Run</span>'
results['SPP'] = '<span style="color:#999999;\">Not Run</span>'
results['MACS2'] = '<span style="color:#999999;\">Not Run</span>'
results['bedGraphToBigWig'] = '<span style="color:#999999;\">Not Run</span>'
results['ChIPseeker'] = '<span style="color:#999999;\">Not Run</span>'
results['MEME-ChIP'] = '<span style="color:#999999;\">Not Run</span>'
results['DiffBind'] = '<span style="color:#999999;\">Not Run</span>'
results['deepTools'] = '<span style="color:#999999;\">Not Run</span>'
results['FastQC'] = '<span style="color:#999999;\">Not Run</span>'
results['MultiQC'] = '<span style="color:#999999;\">Not Run</span>'
results['Python'] = '<span style="color:#999999;\">Not Run</span>'
results['Pipeline Version'] = '<span style="color:#999999;\">Not Run</span>'
# list all files
files = glob.glob('**/*.txt', recursive=True)
......
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