Resolve "Output tool version to report in multiqc"

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PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipleine integrated_pe artifact
• Replace software_versions_mqc.yaml with the most recent CI pipleine generateVersions artifact
• Replace software_references_mqc.yaml with the most recent CI pipleine generateVersions artifact
• CHANGELOG.md is updated
• README.md is updated
• LICENSE.md is updated with new contributors
• Docker images moved to production release and changed in pipeline
• Docker images used in the CI unit tests match those used in pipeline

• Close issue
  Closes #78 (closed)

/cc @ghenry @venkat.malladi

changed milestone to %1.0.0

added CI/CD Doing discussion labels

marked the checklist item This comment contains a description of changes (with reason) as completed

marked the checklist item Replace dag.png with the most recent CI pipleine integrated_pe artifact as completed

marked the checklist item Replace dag.png with the most recent CI pipleine integrated_pe artifact as incomplete

marked the checklist item Replace software_versions_mqc.yaml with the most recent CI pipleine generateVersions artifact as completed

marked the checklist item Replace software_references_mqc.yaml with the most recent CI pipleine generateVersions artifact as completed

marked the checklist item CHANGELOG.md is updated as completed

marked the checklist item README.md is updated as completed

marked the checklist item *Close issue* as completed

marked the checklist item Documentation in docs is updated as completed

added 1 commit

• b20d758a - Update DAG, links and order of sections.

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added 1 commit

• 8eb6c76d - Try to fix order.

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marked as a Work In Progress

added 1 commit

• 28f53e77 - Test software version/references multiqc custom report ordering

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added 1 commit

• df529e22 - Try to get software references working

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added 1 commit

• fb18e579 - Fix custom report names for ordering

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added 2 commits

• 43e3a5e0 - Address typo's and refernces to pipeline.
• 874ffa5f - Merge branch '78-tool_version' of git.biohpc.swmed.edu:gudmap_rbk/rna-seq into 78-tool_version

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added 1 commit

• df286d4f - Fix id in generate versions.

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resolved all threads

unmarked as a Work In Progress

merged