diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py index e9b16a16e79359949cb82ea5bb52dab26916c696..68d45e4e095c25f995c41b3a6b1b85a753408f53 100644 --- a/workflow/scripts/generate_versions.py +++ b/workflow/scripts/generate_versions.py @@ -90,23 +90,20 @@ def main(): out_filename = output + '_mqc.yaml' results = OrderedDict() - results['Nextflow'] = '<span style="color:#999999;\">Not Run</span>' + results['Python'] = '<span style="color:#999999;\">Not Run</span>' + results['DERIVA'] = '<span style="color:#999999;\">Not Run</span>' + results['BDBag'] = '<span style="color:#999999;\">Not Run</span>' + results['RSeQC'] = '<span style="color:#999999;\">Not Run</span>' results['Trim Galore!'] = '<span style="color:#999999;\">Not Run</span>' - results['Cutadapt'] = '<span style="color:#999999;\">Not Run</span>' - results['BWA'] = '<span style="color:#999999;\">Not Run</span>' + results['HISAT2'] = '<span style="color:#999999;\">Not Run</span>' results['Samtools'] = '<span style="color:#999999;\">Not Run</span>' - results['Sambamba'] = '<span style="color:#999999;\">Not Run</span>' - results['BEDTools'] = '<span style="color:#999999;\">Not Run</span>' + results['picard (MarkDuplicates)'] = '<span style="color:#999999;\">Not Run</span>' + results['featureCounts'] = '<span style="color:#999999;\">Not Run</span>' results['R'] = '<span style="color:#999999;\">Not Run</span>' - results['SPP'] = '<span style="color:#999999;\">Not Run</span>' - results['MACS2'] = '<span style="color:#999999;\">Not Run</span>' - results['bedGraphToBigWig'] = '<span style="color:#999999;\">Not Run</span>' - results['ChIPseeker'] = '<span style="color:#999999;\">Not Run</span>' - results['MEME-ChIP'] = '<span style="color:#999999;\">Not Run</span>' - results['DiffBind'] = '<span style="color:#999999;\">Not Run</span>' results['deepTools'] = '<span style="color:#999999;\">Not Run</span>' + results['FastQC'] = '<span style="color:#999999;\">Not Run</span>' results['MultiQC'] = '<span style="color:#999999;\">Not Run</span>' - results['Python'] = '<span style="color:#999999;\">Not Run</span>' + results['Pipeline Version'] = '<span style="color:#999999;\">Not Run</span>' # list all files files = glob.glob('**/*.txt', recursive=True)