diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index e9b16a16e79359949cb82ea5bb52dab26916c696..68d45e4e095c25f995c41b3a6b1b85a753408f53 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -90,23 +90,20 @@ def main():
     out_filename = output + '_mqc.yaml'
 
     results = OrderedDict()
-    results['Nextflow'] = '<span style="color:#999999;\">Not Run</span>'
+    results['Python'] = '<span style="color:#999999;\">Not Run</span>'
+    results['DERIVA'] = '<span style="color:#999999;\">Not Run</span>'
+    results['BDBag'] = '<span style="color:#999999;\">Not Run</span>'
+    results['RSeQC'] = '<span style="color:#999999;\">Not Run</span>'
     results['Trim Galore!'] = '<span style="color:#999999;\">Not Run</span>'
-    results['Cutadapt'] = '<span style="color:#999999;\">Not Run</span>'
-    results['BWA'] = '<span style="color:#999999;\">Not Run</span>'
+    results['HISAT2'] = '<span style="color:#999999;\">Not Run</span>'
     results['Samtools'] = '<span style="color:#999999;\">Not Run</span>'
-    results['Sambamba'] = '<span style="color:#999999;\">Not Run</span>'
-    results['BEDTools'] = '<span style="color:#999999;\">Not Run</span>'
+    results['picard (MarkDuplicates)'] = '<span style="color:#999999;\">Not Run</span>'
+    results['featureCounts'] = '<span style="color:#999999;\">Not Run</span>'
     results['R'] = '<span style="color:#999999;\">Not Run</span>'
-    results['SPP'] = '<span style="color:#999999;\">Not Run</span>'
-    results['MACS2'] = '<span style="color:#999999;\">Not Run</span>'
-    results['bedGraphToBigWig'] = '<span style="color:#999999;\">Not Run</span>'
-    results['ChIPseeker'] = '<span style="color:#999999;\">Not Run</span>'
-    results['MEME-ChIP'] = '<span style="color:#999999;\">Not Run</span>'
-    results['DiffBind'] = '<span style="color:#999999;\">Not Run</span>'
     results['deepTools'] = '<span style="color:#999999;\">Not Run</span>'
+    results['FastQC'] = '<span style="color:#999999;\">Not Run</span>'
     results['MultiQC'] = '<span style="color:#999999;\">Not Run</span>'
-    results['Python'] = '<span style="color:#999999;\">Not Run</span>'
+    results['Pipeline Version'] = '<span style="color:#999999;\">Not Run</span>'
 
     # list all files
     files = glob.glob('**/*.txt', recursive=True)