Commits · 3aa23f2ae41c2b210ae71c9602db460755f26058 · GUDMAP_RBK / RNA-seq · GitLab

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Dec 17, 2020
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
Nov 11, 2020
- Fix number of reads that map. · 7950f38f
  Venkat Malladi authored 4 years ago
  
  7950f38f
Nov 10, 2020
- Fix spelling error · c7178e06
  Venkat Malladi authored 4 years ago
  
  c7178e06
- Fix parsing of json file. · 4a5ac4a9
  Venkat Malladi authored 4 years ago
  
  4a5ac4a9
- Fix consistency check for where it is grabbing. · ded770b2
  Venkat Malladi authored 4 years ago
  
  ded770b2
Oct 31, 2020
- Update consistency checks to be fully in python. · 10cbf01b
  Venkat Malladi authored 4 years ago
  
  10cbf01b
Sep 14, 2020
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
Aug 24, 2020
- Update unit test for count #73 · 6e4ad752
  Gervaise Henry authored 4 years ago
  
  6e4ad752
Aug 12, 2020
- Add unit test for outputBag · d65d19ec
  Gervaise Henry authored 4 years ago
  
  d65d19ec
Aug 10, 2020
- Convert string to int for range checking in consistency test · 6341ca53
  Gervaise Henry authored 4 years ago
  
  6341ca53
- Change consistence test from exact match to within 1/100,000 change from expected · ade9acec
  Gervaise Henry authored 4 years ago
  
  ade9acec
Aug 03, 2020
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
Jul 31, 2020
- Fix consistency module #27 · 4539dba1
  Gervaise Henry authored 4 years ago
  
  4539dba1
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
Jul 30, 2020
- Test for pytest for parseMetadata: remove unnecessary print #54 · d7b38e88
  Gervaise Henry authored 4 years ago
  
  d7b38e88
- Test for pytest for parseMetadata: supposed to pass #54 · 6fe96e00
  Gervaise Henry authored 4 years ago
  
  6fe96e00
- Test for pytest for parseMetadata: supposed to pass #54 · 22fbaf52
  Gervaise Henry authored 4 years ago
  
  22fbaf52
- Test for pytest for parseMetadata: force pass #54 · 729ee825
  Gervaise Henry authored 4 years ago
  
  729ee825
- Test for pytest for parseMetadata: force pass #54 · 50df04d1
  Gervaise Henry authored 4 years ago
  
  50df04d1
- Test for pytest for parseMetadata: supposed to pass #54 · 32f281b4
  Gervaise Henry authored 4 years ago
  
  32f281b4
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should pass #48 · 979e6af4
  Gervaise Henry authored 4 years ago
  
  979e6af4
- Test for pytest for parseMetadata: supposed to pass #54 · 042e9177
  Gervaise Henry authored 4 years ago
  
  042e9177
- Print output of parseMetadata pytest read · fe544976
  Gervaise Henry authored 4 years ago
  
  fe544976
- Print output of parseMetadata pytest read · 95aa209b
  Gervaise Henry authored 4 years ago
  
  95aa209b
- Test for pytest for parseMetadata: supposed to pass #54 · 58415f1c
  Gervaise Henry authored 4 years ago
  
  58415f1c
- Test for pytest for parseMetadata: supposed to pass #54 · dbb02aae
  Gervaise Henry authored 4 years ago
  
  dbb02aae
- Test for pytest for parseMetadata: supposed to pass #54 · 390a9b5d
  Gervaise Henry authored 4 years ago
  
  390a9b5d
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Add initial trial for dataQC unit improvement #48 · 6ed76f56
  Gervaise Henry authored 4 years ago
  
  6ed76f56
Jul 14, 2020
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4
Apr 22, 2020
- Add unit CI test for (new) inferMetadata · c17b8a62
  Gervaise Henry authored 4 years ago
  
  c17b8a62
Mar 30, 2020
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 5 years ago
  
  622ebfca
Mar 27, 2020
- Update test_dedupReads.py · d0d886a4
  Jonathan Gesell authored 5 years ago
  
  d0d886a4
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 5 years ago
  
  f8ab64d0
- Update test_dedupReads.py · 2321e6cc
  Jonathan Gesell authored 5 years ago
  
  2321e6cc
- Update test_dedupReads.py · 12b9d87f
  Jonathan Gesell authored 5 years ago
  
  12b9d87f
- Update test_dedupReads.py to include split, testing chr1, chr2, chr8 · a06578ad
  Jonathan Gesell authored 5 years ago
  
  a06578ad
Mar 24, 2020
- Add unit test for downsampleData · 8e3cf6c4
  Gervaise Henry authored 5 years ago
  
  8e3cf6c4