Commits · 08c58f6f3e5bfdc559569ffb6aff5fb09b38695b · GUDMAP_RBK / RNA-seq

Nov 09, 2020
- remove seqtk and update output for stdout. · 08c58f6f
  Venkat Malladi authored 4 years ago
  
  08c58f6f
- Fix test stage name. · 482fd80d
  Venkat Malladi authored 4 years ago
  
  482fd80d
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Sep 13, 2020
- Update ref unit test for datahub · 45b7f679
  Gervaise Henry authored 4 years ago
  
  45b7f679
- Split grep from pipe from python · df0f368b
  Gervaise Henry authored 4 years ago
  
  df0f368b
Sep 12, 2020
- Fix extractRefData arg · 17df0fa5
  Gervaise Henry authored 4 years ago
  
  17df0fa5
Sep 11, 2020
- Change datahub ref ci form get to ls · 0883570c
  Gervaise Henry authored 4 years ago
  
  0883570c
- Use new gudmaprbk dockerhub deriva1.3 for ref unit · 160b314c
  Gervaise Henry authored 4 years ago
  
  160b314c
Sep 10, 2020
- Update .gitlab-ci.yml · 166616ec
  Venkat Malladi authored 4 years ago
  
  166616ec
- Update .gitlab-ci.yml · 6dc46c16
  Venkat Malladi authored 4 years ago
  
  6dc46c16
- Fix version · 2d08f484
  Venkat Malladi authored 4 years ago
  
  2d08f484
- Load another package · dc04540a
  Venkat Malladi authored 4 years ago
  
  dc04540a
- Update Pytest version · 300fc060
  Venkat Malladi authored 4 years ago
  
  300fc060
- Remove conda env · 73e52340
  Venkat Malladi authored 4 years ago
  
  73e52340
- Add --no-dep to conda create · 864c1f98
  Gervaise Henry authored 4 years ago
  
  864c1f98
- Fix CI lint and replicate env in hu test · fcf86055
  Gervaise Henry authored 4 years ago
  
  fcf86055
- Create deriva python env in ci until deriva1.3 docker image available · e84a5f04
  Gervaise Henry authored 4 years ago
  
  e84a5f04
Sep 09, 2020
- Link deriva auth cookie for datahub get ref · 0737fb67
  Gervaise Henry authored 4 years ago
  
  0737fb67
- Fix CI lint · 00983e2b
  Gervaise Henry authored 4 years ago
  
  00983e2b
- Put getRef in CI stage and add get from datahub · 97cd5936
  Gervaise Henry authored 4 years ago
  
  97cd5936
Aug 27, 2020
- Update .gitlab-ci.yml · 770a16cf
  Gervaise Henry authored 4 years ago
  
  770a16cf
- Update .gitlab-ci.yml · f4965121
  Gervaise Henry authored 4 years ago
  
  f4965121
- Update .gitlab-ci.yml · 99a28790
  Gervaise Henry authored 4 years ago
  
  99a28790
- Update .gitlab-ci.yml · 8b341c8a
  Gervaise Henry authored 4 years ago
  
  8b341c8a
- Update .gitlab-ci.yml · 14886d2a
  Gervaise Henry authored 4 years ago
  
  14886d2a
- Update .gitlab-ci.yml · 3e0d7cc0
  Gervaise Henry authored 4 years ago
  
  3e0d7cc0
- Update .gitlab-ci.yml · b1e860c5
  Gervaise Henry authored 4 years ago
  
  b1e860c5
- Update .gitlab-ci.yml · c39bba41
  Gervaise Henry authored 4 years ago
  
  c39bba41
- Update .gitlab-ci.yml · 6c277421
  Gervaise Henry authored 4 years ago
  
  6c277421
Aug 26, 2020
- Fix CI lint · 6e4aea82
  Gervaise Henry authored 4 years ago
  
  6e4aea82
- Specify when to run CI tests #76 · 7d699ed3
  Gervaise Henry authored 4 years ago
  
  7d699ed3
- Add species override · 03e05d4c
  Gervaise Henry authored 4 years ago
  
  03e05d4c
Aug 25, 2020
- Re-add multiqc html report to integration artifacts · 8b56bdc5
  Gervaise Henry authored 4 years ago
  
  8b56bdc5
- Fix fastqsForce param in CI · f6a3d6d2
  Gervaise Henry authored 4 years ago
  
  f6a3d6d2
- Update override repRID to match inputs · 179cd9a4
  Gervaise Henry authored 4 years ago
  
  179cd9a4
- Fix CI lint · 94f02a14
  Gervaise Henry authored 4 years ago
  
  94f02a14
- Move Override stage in CI to integration (and update bag test-data location · 05b685ce
  Gervaise Henry authored 4 years ago
  
  05b685ce
- Fix CI lint · 5a7daad9
  Gervaise Henry authored 4 years ago
  
  5a7daad9
- Add fastq override #71 · 5f48c1c1
  Gervaise Henry authored 4 years ago
  
  5f48c1c1
- Add CI test for inputBag override · d7b22a9f
  Gervaise Henry authored 4 years ago
  
  d7b22a9f