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Commit 5a7daad9 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix CI lint

parent 579959d8
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2 merge requests!43Develop,!420.0.3
Pipeline #8004 failed with stages
in 1 hour and 58 minutes
......@@ -208,16 +208,16 @@ inputBag:
- inputBagOverride_PE_multiqc_data.json
expire_in: 7 days
fastq:
stage: override
script:
- hostname
- ulimit -a
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --fastqForce 'test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz' --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./fastqOverride_PE_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- fastqOverride_PE_multiqc_data.json
expire_in: 7 days
\ No newline at end of file
fastq:
stage: override
script:
- hostname
- ulimit -a
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --fastqForce 'test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz' --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./fastqOverride_PE_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- fastqOverride_PE_multiqc_data.json
expire_in: 7 days
\ No newline at end of file
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