diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c2d779ed38c2ec9fd113917c3d1afe23c4bddc88..eed15a270a01076b968ac235510d18b6b21b48cc 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -208,16 +208,16 @@ inputBag: - inputBagOverride_PE_multiqc_data.json expire_in: 7 days - fastq: - stage: override - script: - - hostname - - ulimit -a - - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --fastqForce 'test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz' --ci true - - find . -type f -name "multiqc_data.json" -exec cp {} ./fastqOverride_PE_multiqc_data.json \; - artifacts: - name: "$CI_JOB_NAME" - when: always - paths: - - fastqOverride_PE_multiqc_data.json - expire_in: 7 days \ No newline at end of file +fastq: + stage: override + script: + - hostname + - ulimit -a + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --fastqForce 'test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz' --ci true + - find . -type f -name "multiqc_data.json" -exec cp {} ./fastqOverride_PE_multiqc_data.json \; + artifacts: + name: "$CI_JOB_NAME" + when: always + paths: + - fastqOverride_PE_multiqc_data.json + expire_in: 7 days \ No newline at end of file