Commits · d40c0baa8853b8a4befaf906307e2d4806dbebf9 · GCRB / TFSEE

Nov 01, 2021
- Update matrix_analysis.py · d40c0baa
  Venkat Malladi authored 3 years ago
  
  d40c0baa
Mar 18, 2020
- Update README.md · 05c6cfd0
  Venkat Malladi authored 4 years ago
  
  05c6cfd0
- Cleaned up repository for publication. · 6f85850d
  Venkat Malladi authored 4 years ago
  
  6f85850d
- Moved extra files. · 3a4bb168
  Venkat Malladi authored 4 years ago
  
  3a4bb168
- Add in all scripts and analysis for data. · ac7a8825
  Venkat Malladi authored 4 years ago
  
  ac7a8825
- Updated files. · f96ad6a9
  Venkat Malladi authored 4 years ago
  
  f96ad6a9
- Update figure. · b57a2d43
  Venkat Malladi authored 4 years ago
  
  b57a2d43
- Update percentages. · 28e65731
  Venkat Malladi authored 4 years ago
  
  28e65731
- Update intervene figure. · 0aeafc05
  Venkat Malladi authored 4 years ago
  
  0aeafc05
- Merge branch 'master' of git.biohpc.swmed.edu:venkat.malladi/pitted · 31dc8409
  Venkat Malladi authored 4 years ago
  
  31dc8409
- Add in both marks. · 0839f23d
  Venkat Malladi authored 4 years ago
  
  0839f23d
Oct 21, 2018
- update colors. · 26a91a92
  Venkat Malladi authored 6 years ago
  
  26a91a92
- Add in Venndiagram. · b4e80a6f
  Venkat Malladi authored 6 years ago
  
  b4e80a6f
Jun 09, 2017
- Fix hard coded value. · 25c267a8
  Venkat Malladi authored 7 years ago
  
  25c267a8
Jun 06, 2017
- Update Histone analysis. · 0e8e488c
  Venkat Malladi authored 7 years ago
  
  0e8e488c
- Update rank order. · 81b2a391
  Venkat Malladi authored 7 years ago
  
  81b2a391
- Analysis for the Histone centered matrix. · 8c613d61
  Venkat Malladi authored 7 years ago
  
  8c613d61
Jun 05, 2017
- Update boxplot width. · cb0dd079
  Venkat Malladi authored 7 years ago
  
  cb0dd079
- Complete analysis of ranked clusters. · 50a1dfa4
  Venkat Malladi authored 7 years ago
  
  50a1dfa4
- Update code that was not previously saved. · bce3ebcb
  Venkat Malladi authored 7 years ago
  
  bce3ebcb
Jun 02, 2017
- Update matrix analysis to look at TFS and clossest genes and enhancers expression. · 662ba080
  Venkat Malladi authored 7 years ago
  
  662ba080
May 31, 2017
- Update histone analysis. · 1dd72c6a
  Venkat Malladi authored 7 years ago
  
  1dd72c6a
May 26, 2017
- Update histone analysis. · e1db3029
  Venkat Malladi authored 7 years ago
  
  e1db3029
Apr 10, 2017
- Histone centered processing. · 9c3858b4
  Venkat Malladi authored 7 years ago
  
  9c3858b4
Apr 03, 2017
- Add in overlap of enhacners. · cffef5f6
  Venkat Malladi authored 7 years ago
  
  cffef5f6
Mar 30, 2017
- Added in rank order anaylsis, and analysis for cluster 3. · f1d15a09
  Venkat Malladi authored 7 years ago
  
  f1d15a09
Mar 24, 2017
- Update matrix analysis for better clustering. · d3461a96
  Venkat Malladi authored 7 years ago
  
  d3461a96
Mar 23, 2017
- Added analysis of looking at Cluster 3. · 9ad9fcd7
  Venkat Malladi authored 7 years ago
  
  9ad9fcd7
Mar 22, 2017
- First pass at analysis of GRO-seq centered enhancers. · 0a630fb7
  Venkat Malladi authored 7 years ago
  
  0a630fb7
Mar 17, 2017
- Updated Histone only location browswer track. · 04a3b48b
  Venkat Malladi authored 8 years ago
  
  04a3b48b
Mar 07, 2017
- Verifyed that number of enhancers is 4974. · 6a56e408
  Venkat Malladi authored 8 years ago
  
  6a56e408
- Update barplot. · 632f0f38
  Venkat Malladi authored 8 years ago
  
  632f0f38
- Update Enhancer processing. · 2f69ab2e
  Venkat Malladi authored 8 years ago
  
  2f69ab2e
- Fix name rpkm values. · 47afde44
  Venkat Malladi authored 8 years ago
  
  47afde44
- fix syntax. · 202ae5c7
  Venkat Malladi authored 8 years ago
  
  202ae5c7
- Update overlap of enhancers. · ea30a0c5
  Venkat Malladi authored 8 years ago
  
  ea30a0c5
Mar 06, 2017
- Update GRO-seq enhancer processing. · ec5eb1ed
  Venkat Malladi authored 8 years ago
  
  ec5eb1ed
Mar 02, 2017
- Update pysam to account for new syntax. · 6a8c4de2
  Venkat Malladi authored 8 years ago
  
  6a8c4de2
- Update pysam to account for new syntax. · 00dd6e2e
  Venkat Malladi authored 8 years ago
  
  00dd6e2e
Feb 23, 2017
- get 1kb center of enhancer ans figures. · cd3784ba
  Venkat Malladi authored 8 years ago
  
  cd3784ba