Update boxplot width.

GRO_seq_TFSEE/matrix_analysis.py

@@ -339,7 +339,6 @@ needed_rows = [row for row in rpkm_scaled.index if row in list(motif_enhancers_s
 rpkm_robust_filtered= rpkm_scaled.loc[needed_rows]
 H3K27ac_robust_filtered= H3K27ac_scaled.loc[needed_rows]
 H3K4me1_robust_filtered= H3K4me1_scaled.loc[needed_rows]
-fd
 
 # 1. add H3K27ac and H3K4me1 signal
 H3K27ac_H3K4me1 = H3K27ac_scaled.add(H3K4me1_scaled)
@@ -453,8 +452,8 @@ colors = ["#FFD66F","#2E6A44","#862743", "#4FA6C7", "#3398CC"]
 medianprops = dict(linestyle='-', linewidth=2, color='black')
 
 box = cell_tf_values_std_cluster_1.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)
@@ -470,9 +469,8 @@ plt.clf()
 
 
 box = cell_tf_values_std_cluster_2.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 1.5)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)
@@ -487,8 +485,8 @@ plt.savefig('box_plot_cluster_2.png')
 plt.clf()
 
 box = cell_tf_values_std_cluster_3.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)
@@ -504,8 +502,8 @@ plt.clf()
 
 
 box = cell_tf_values_std_cluster_4.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)
@@ -592,8 +590,8 @@ cluster4_tfs = tf_cell_lines.loc[cell_tf_values_std_cluster_4.index.values]
 cluster4_tfs.to_csv("cluster_4_tfs.csv")
 
 box = cluster4_tfs.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)
@@ -671,8 +669,8 @@ cluster3_tfs = tf_cell_lines.loc[cell_tf_values_std_cluster_3.index.values]
 cluster3_tfs.to_csv("cluster_3_tfs.csv")
 
 box = cluster3_tfs.boxplot(column=['ES_D0', 'ES_D2', 'ES_D5', 'ES_D7',  'ES_D10'],patch_artist=True,showfliers=False,manage_xticks=False,widths = 0.6, medianprops = medianprops)
-plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 3)
-plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 3)
+plt.setp(box['whiskers'], color='k', linestyle='-', linewidth = 5)
+plt.setp(box['boxes'], color='k', linestyle='-', linewidth = 5)
 
 for patch, color in zip(box['boxes'], colors):
     patch.set_facecolor(color)