Update matrix_analysis.py

analysis/Histone_TFSEE/matrix_analysis.py

@@ -176,6 +176,8 @@ for meme,tom in meme_cell_dict.iteritems():
     tomtom_motif_reorder = tomtom_motif.reindex( list(meme_positions.columns.values)).fillna(0)
     # dot product
     meme_tomtom_cell = meme_positions.dot(tomtom_motif_reorder)
+    meme_tomtom_cell = np.log10(meme_tomtom_cell+0.01)​
+    meme_tomtom_cell = np.negative(meme_tomtom_cell)
     # Scale and add
     scaler = preprocessing.MinMaxScaler()
     meme_tomtom_cell_transform = meme_tomtom_cell.T
@@ -186,6 +188,7 @@ for meme,tom in meme_cell_dict.iteritems():
     meme_tomtom = temp
 
 # Transform meme tom_tom
+
 motif_enhancers = meme_tomtom.T
 
 # Rename column headers