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Commit 8c613d61 authored by Venkat Malladi's avatar Venkat Malladi
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Analysis for the Histone centered matrix.

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Histone_TFSEE/box_plot_cluster_1.png

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Histone_TFSEE/box_plot_cluster_1.png

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Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
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Histone_TFSEE/box_plot_cluster_1_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_2.png

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Histone_TFSEE/box_plot_cluster_2.png

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Histone_TFSEE/box_plot_cluster_2.png
Histone_TFSEE/box_plot_cluster_2.png
Histone_TFSEE/box_plot_cluster_2.png
Histone_TFSEE/box_plot_cluster_2.png
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Histone_TFSEE/box_plot_cluster_2_enhancers_rpkm.png

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Histone_TFSEE/box_plot_cluster_2_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3.png

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Histone_TFSEE/box_plot_cluster_3.png

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Histone_TFSEE/box_plot_cluster_3.png
Histone_TFSEE/box_plot_cluster_3.png
Histone_TFSEE/box_plot_cluster_3.png
Histone_TFSEE/box_plot_cluster_3.png
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Histone_TFSEE/box_plot_cluster_3_enhancers_rpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
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This diff is collapsed.
symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
E2F6,12.765,12.05,13.85,15.7,13.92
GATA4,0.08,55.85,60.32,168.535,57.74
GLI2,17.815,4.495,1.7,0.37,1.075
IRF1,2.89,2.39,0.305,3.11,2.56
KLF1,0.32,0.805,1.18,0.59,0.45
KLF12,3.72,4.185,8.88,8.085,9.125
KLF16,17.695,18.915,10.375,6.245,6.515
......@@ -11,7 +9,6 @@ MTF1,2.85,3.065,4.065,5.195,4.16
NR2C2,11.36,11.285,12.59,10.985,11.54
NRF1,12.775,12.645,15.66,15.51,16.51
PLAG1,3.42,3.9,4.71,6.5,4.775
RARA,6.195,10.955,11.025,33.47,26.135
RREB1,10.315,17.075,10.515,12.59,14.675
RXRA,13.38,31.955,56.265,27.41,34.875
SMAD2,33.815,63.24,29.905,33.295,33.98
......@@ -19,7 +16,5 @@ SMAD4,54.035,47.595,59.69,60.76,66.16
SP2,6.75,6.92,10.8,8.075,12.81
SP3,16.795,14.03,30.47,22.055,22.605
SP8,1.075,2.045,0.515,0.295,0.05
STAT2,14.685,26.38,24.935,48.685,37.59
TCF3,136.215,124.305,134.515,121.675,163.045
ZIC3,27.06,95.46,4.98,0.695,0.085
ZNF740,7.14,14.92,27.79,28.23,20.005
This diff is collapsed.
symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
AHR,1.735,0.75,2.285,6.07,2.955
EGR1,2.3,1.69,1.2,7.685,6.465
EHF,0.0,0.0,0.035,16.115,6.33
ELF1,6.8,11.92,9.41,29.9,29.37
ELF3,2.21,3.685,3.88,52.51,13.54
ELF4,0.89,0.73,2.49,0.68,3.03
FOXP1,9.56,5.68,48.0,80.06,80.08
GATA4,0.08,55.85,60.32,168.535,57.74
GLIS3,0.075,0.315,0.16,1.19,10.685
ID4,1.555,1.32,84.935,8.975,47.94
INSM1,0.1,0.02,0.6,6.33,30.37
IRF1,2.89,2.39,0.305,3.11,2.56
KLF4,2.385,0.28,0.21,2.195,0.88
KLF5,2.025,21.66,6.495,23.005,47.25
NHLH1,0.155,0.16,0.235,0.675,0.67
NR2F1,0.0,0.0,0.26,82.77,53.655
PPARG,0.07,0.215,1.295,1.865,2.08
RARA,6.195,10.955,11.025,33.47,26.135
SMAD3,18.595,12.95,10.205,20.925,35.53
SOX3,3.33,0.01,1.255,4.555,0.885
STAT2,14.685,26.38,24.935,48.685,37.59
TFAP2A,0.01,0.19,2.715,0.39,0.52
ZFX,5.035,5.13,5.505,9.14,11.425
ZNF740,7.14,14.92,27.79,28.23,20.005
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Histone_TFSEE/k_means_clustering.png

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Histone_TFSEE/k_means_clustering.png

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Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
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